Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium128g00002 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATCATATGCGGAAGGCTAAGAGGAGGTGTTGAATCTCGGGTGGTGTATCAGATTGAATCAAGAATTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGAATCAGAACCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAATCTTGCGTATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGCCCAGTATGCCGTCTGCCATTGAAGAACTCTTCTGAAACAAAACATGTAAGACCTGTGACGTTTACCATGAGCCAATCACTTGACGAGTCTCACACATCAGAAAGGAGTGAAAATGCAGAGAGACATGATGAACAACCTACTCCTACTGCAGCCAGTAACTCTTTACAACCAACTTCAGGTGAAGAAGGAGCAAGGCAATGA 585 0.4291 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRVVYQIESRIDIEQPEHHVNDPESEPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYKEREILRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSERSENAERHDEQPTPTAASNSLQPTSGEEGARQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium128g00002 194 MobiDBLite consensus disorder prediction 158 172 - -
Vium128g00002 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Vium128g00002 194 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Vium128g00002 194 Pfam Ring finger domain 89 132 IPR001841 -
Vium128g00002 194 CDD RING-H2_EL5-like 89 132 - -
Vium128g00002 194 SMART ring_2 90 131 IPR001841 -
Vium128g00002 194 MobiDBLite consensus disorder prediction 173 194 - -
Vium128g00002 194 MobiDBLite consensus disorder prediction 144 194 - -
Vium128g00002 194 SUPERFAMILY RING/U-box 80 139 - -
Vium128g00002 194 PANTHER OS11G0150450 PROTEIN 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium128g00002 Vium-Chr128 66267 68520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium128g00002 79 194 C3H Transcription Factor Family AT4G10160 36.441 7.74e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium128g00002 - - gmx:100780922 366.696