Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12871g00008 ATGGTGAAGGACTGGTTGGAATTGATGAAGCCTCAATTAAATGTTGCTGTGGCTCTAGTTATTAGCTTGCTCTGTATTCAGCATTCATTTTGTGATGAACTTTCTGATACTGGACCAAACAAGTGGAAATGTAGATGCTCTTTATTACAAGGGAACCATACATACTCTCGTGCTAATTGTTCCAAATCATGTGATTGTCATTCAGATGCTGAACAGAGTGCATCCATATGGACATGCTTATGTGATTCGAATGGGTTTCCTGAAGTGTCAGCAGATGGCCATAACCTTAACTGTTTTGATGCCTGCAATTGCACATGGGGATCTCTCAGGATGCCACTTGGTTCAAAGAAGCAAATTTCGAGCAAGATTGTAGTAGTTATTCTATCAGTATGTGCTACATGCACAACTATTGCATTTCTTGCCTCGGTTGTATGTCAGGTCTGCCGAAGGGAGAGATGTTCTATTCAATCACCAATGATCTCATCAGATAAAGAAACAAGTTACAGTAGCACCACCAACTTATTCAGTCATAAGACTTCTTCGCCTGTTAGTCATATTACAGGATGCTTTCAGAAGTCCTCTTTGTTGTTTGGTAGCCAAAGACAAACCTTTTATGGAAATATTATTCAATTTTCATTTGCTGAACTGGAAAATGCCACCGAAAACTTTTCAACTTCCAATCTAACTGGACTAGGTGGAAGCAGTTATGTATACCGTGGTCGGCTGAAAGATGGCAGTAATGTGGCAGTCAAGAGACTGAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTTACAGAGATTGAACTATTGTCTAGACTTCATCATTGTCATCTGGTGCCATTAGTGGGATACTGCTCAGAACTAAAAGGAAAAAATGTTCAAAGGTTGCTAGTGTTTGAATACATGACTAATGGAAATTTGAGGGACCGCTTAGACGGAGTTTTTGGAAAGAAAATGGACTGGTCAACTCGAGTTAGAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCTAGAATTCTGCACAGAGATGTCAAATCAACAAACATTCTTCTGGACAAAAATTGGCAAGCAAAAATAACTGATCTCGGTATGGCTAAAAGCTTGAGAGCTGATGACCACCCCAGTCGTTCAGATTCTCCAGCAAGAATGCAGGGAACATTTGGTTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCCATCCACAAATCTGCAGGCAAAGAACAAAGTCTTGTTATATGGGCAAGTCCTCGCTTAAAGGATAGCAGGCGAGTAATAACCGAGTTGGCTGATCCACAGTTGAAAGGAAACTTCCCAGAAGAAGAGCTGCATATAATGGCATACTTAGCTAAGGAGTGCTTGCTGTTGGATCCTGACACTCGGCCAACTATGACTGAAGTTGTTCAAATTCTTTCCAGTATCTCCCCGGACAGATCTAGAAGGAGAAGAAACATTCCAGTGAGATTTTTTCAGGAACCGGAGGACTTGGAGAATCAAAGGCAAGCTCCACCAAGTATATTTCCAACTTGTAATTTATTGCCGTTAGGTGTTGACCACAATCTTAATGTTGGCAATGAAGATAAAGATGCACATACAGTTTCAAGTGGGGATATGGAGAGTTTGATCCTCTTTAGTCCAAAGGGTGAGAACTGGCATGCATCAGAGGAGGAAATGGTAGATTTAACTGAGCCTCGTTTCGAATCATTTTTCATGACAAACCCCAATTTCTCTTGA 1827 0.4143 MVKDWLELMKPQLNVAVALVISLLCIQHSFCDELSDTGPNKWKCRCSLLQGNHTYSRANCSKSCDCHSDAEQSASIWTCLCDSNGFPEVSADGHNLNCFDACNCTWGSLRMPLGSKKQISSKIVVVILSVCATCTTIAFLASVVCQVCRRERCSIQSPMISSDKETSYSSTTNLFSHKTSSPVSHITGCFQKSSLLFGSQRQTFYGNIIQFSFAELENATENFSTSNLTGLGGSSYVYRGRLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGVFGKKMDWSTRVRIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKSLRADDHPSRSDSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSAGKEQSLVIWASPRLKDSRRVITELADPQLKGNFPEEELHIMAYLAKECLLLDPDTRPTMTEVVQILSSISPDRSRRRRNIPVRFFQEPEDLENQRQAPPSIFPTCNLLPLGVDHNLNVGNEDKDAHTVSSGDMESLILFSPKGENWHASEEEMVDLTEPRFESFFMTNPNFS 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12871g00008 608 FunFam receptor-like serine/threonine-protein kinase NCRK 304 514 - -
Vium12871g00008 608 PANTHER OS01G0750732 PROTEIN 70 509 - -
Vium12871g00008 608 Pfam Protein kinase domain 227 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12871g00008 608 ProSiteProfiles Protein kinase domain profile. 223 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12871g00008 608 CDD STKc_IRAK 230 505 - -
Vium12871g00008 608 SMART serkin_6 223 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12871g00008 608 FunFam receptor-like serine/threonine-protein kinase NCRK 197 303 - -
Vium12871g00008 608 Gene3D Transferase(Phosphotransferase) domain 1 304 520 - -
Vium12871g00008 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Vium12871g00008 608 SUPERFAMILY Protein kinase-like (PK-like) 203 502 IPR011009 -
Vium12871g00008 608 Gene3D Phosphorylase Kinase; domain 1 196 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12871g00008 Vium-Chr12871 42336 47633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12871g00008 9 604 Receptor kinase-like Gene Family AT2G28250 51.895 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vium12871g00008 Pkinase 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12871g00008 - - gmx:100499641 1023.85