Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12871g00006 ATGAAGCCTCAATTAAATGTTGCTGTGGCTCTAGTTATTAGCTTGCTCTGTATTCAGCATTCATTTTGTGATGAACTTTCTGATACTGGACCAAACAAGTGGAAATGTAGATGCTCTTTATTACAAGGGAACCATACATACTCTCGTGCTAATTGTTCCAAATCATGTGATTGTCATTCAGATGCTGAACAGAGTGCATCCATATGGACATGCTTATGTGATTCGAATGGGTTTCCTGAAGTGTCAGCAGATGGCCATAACCTTAACTGTTTTGATGCCTGCAATTGCACATGGGGATCTCTCAGGATGCCACTTGGTTCAAAGAAGCAAATTTCGAGCAAGATTGTAGTAGTTATTCTATCAGTATGTGCTACATGCACAACTATTGCATTTCTTGCCTCGGTTGTATGTCAGGTCTGCCGAAGGGAGAGATGTTCTATTCAATCACCAATGATCTCATCAGATAAAGAAACAAGTTACAGTAGCACCACCAACTTATTCAGTCATAAGACTTCTTCGCCTGTTAGTCATATTACAGGATGCTTTCAGAAGTCCTCTTTGTTGTTTGGTAGCCAAAGACAAACCTTTTATGGAAATATTATTCAATTTTCATTTGCTGAACTGGAAAATGCCACCGAAAACTTTTCAACTTCCAATCTAACTGGACTAGGTGGAAGCAGTTATGTATACCGTGGTCGGCTGAAAGATGGCAGTAATGTGGCAGTCAAGAGACTGAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTTACAGAGATTGAACTATTGTCTAGACTTCATCATTGTCATCTGGTGCCATTAGTGGGATACTGCTCAGAACTAAAAGGAAAAAATGTTCAAAGGTTGCTAGTGTTTGAATACATGACTAATGGAAATTTGAGGGACCGCTTAGACGGAGTTTTTGGAAAGAAAATGGACTGGTCAACTCGAGTTAGAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCTAGAATTCTGCACAGAGATGTCAAATCAACAAACATTCTTCTGGACAAAAATTGGCAAGCAAAAATAACTGATCTCGGTATGGCTAAAAGCTTGAGAGCTGATGACCACCCCAGTCGTTCAGATTCTCCAGCAAGAATGCAGGGAACATTTGGTTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCCATCCACAAATCTGCAGGCAAAGAACAAAGTCTTGTTATATGGGCAAGTCCTCGCTTAAAGGATAGCAGGCGAGTAATAACCGAGTTGGCTGATCCACAGTTGAAAGGAAACTTCCCAGAAGAAGAGCTGCATATAATGGCATACTTAGCTAAGGAGTGCTTGCTGTTGGATCCTGACACTCGGCCAACTATGACTGAAGTTGTTCAAATTCTTTCCAGTATCTCCCCGGACAGATCTAGAAGGAGAAGAAACATTCCAGTGAGATTTTTTCAGGAACCGGAGGACTTGGAGAATCAAAGGCAAGCTCCACCAAGTATATTTCCAACTTGTAATTTATTGCCGTTAGGTGTTGACCACAATCTTAATGTTGGCAATGAAGATAAAGATGCACATACAGTTTCAAGTGGGGATATGGAGAGTTTGATCCTCTTTAGTCCAAAGGGTGAGAACTGGCATGCATCAGAGGAGGAAATGGTAGATTTAACTGAGCCTCGTTTCGAATCATTTTTCATGACAAACCCCAATTTCTCTTGA 1803 0.4138 MKPQLNVAVALVISLLCIQHSFCDELSDTGPNKWKCRCSLLQGNHTYSRANCSKSCDCHSDAEQSASIWTCLCDSNGFPEVSADGHNLNCFDACNCTWGSLRMPLGSKKQISSKIVVVILSVCATCTTIAFLASVVCQVCRRERCSIQSPMISSDKETSYSSTTNLFSHKTSSPVSHITGCFQKSSLLFGSQRQTFYGNIIQFSFAELENATENFSTSNLTGLGGSSYVYRGRLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGVFGKKMDWSTRVRIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKSLRADDHPSRSDSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSAGKEQSLVIWASPRLKDSRRVITELADPQLKGNFPEEELHIMAYLAKECLLLDPDTRPTMTEVVQILSSISPDRSRRRRNIPVRFFQEPEDLENQRQAPPSIFPTCNLLPLGVDHNLNVGNEDKDAHTVSSGDMESLILFSPKGENWHASEEEMVDLTEPRFESFFMTNPNFS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12871g00006 600 PANTHER OS01G0750732 PROTEIN 62 501 - -
Vium12871g00006 600 SUPERFAMILY Protein kinase-like (PK-like) 195 494 IPR011009 -
Vium12871g00006 600 FunFam receptor-like serine/threonine-protein kinase NCRK 296 506 - -
Vium12871g00006 600 Gene3D Transferase(Phosphotransferase) domain 1 296 512 - -
Vium12871g00006 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672|GO:0006468
Vium12871g00006 600 Pfam Protein kinase domain 219 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12871g00006 600 SMART serkin_6 215 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12871g00006 600 FunFam receptor-like serine/threonine-protein kinase NCRK 189 295 - -
Vium12871g00006 600 ProSiteProfiles Protein kinase domain profile. 215 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12871g00006 600 Gene3D Phosphorylase Kinase; domain 1 188 295 - -
Vium12871g00006 600 CDD STKc_IRAK 222 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12871g00006 Vium-Chr12871 42336 47732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12871g00006 1 596 Receptor kinase-like Gene Family AT2G28250 51.895 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vium12871g00006 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12871g00006 - - gmx:100499641 1023.85