Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12871g00005 ATGCTTTTGACGATTTGCACTTTCTTGATGCAATCATTGTTGGTGCTTTTGGATAATCAACAAACATTTGATAGAAAGAAAAAACATCAAGTTTCAGTTTTTAAATTGCTCCCAGATTCATATTTTTTATTGAAGAGGGCTTCATACTTCTGGAATATCGAAATGGCTTTTGGTAATTCTAGATCTGCAAGGTCTGAAGATGATCCGGAGCTAGCTAAATTTCCTGCAAGTATCGGTGACAACGGTTTCAAGATCAAATACCACATTGATGGGACACAAATACCTGAGCCTAGTTCCAAAATGGCTAAGAAAAAGGTGACGGGGAAGTTCTTGAAAGCTAGAATGTTGTCAAGAGTGTTCTCGGAAGACTATGACAGAGTCAAACGAAGAGTATTAGATCCCAGGGGACAAATCATACACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTGTCTTTGTTTGTGGACCCTTTGTTCTTTTATCTGCCAGTGGTTCGAGATGAAGTGTGCATTGATATTGGAATAACTCCTGAGGTTATCCTCACTCTGGTAAGATCAGTGGGGGACGTCTTCTACGTGATTCAGATTTTGTTGAAGTTTCGTACGGCTTTTGTTGCTCCCTCTTCAAGGGTTTTTGGGAGAGGAGAACTTGTTGTAGGATATTCTAAGATTGCAGTTAGGTACCTTAAAAAGAGTTTCTGGTTAGACTTTGTTGCTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTATTATCCCAACTCTTAAGGGTTCAACCATGGGCAACACAAAAAATGTCCTTCGCTTCATTATCGTTTTCCAATATTTTCCGAGGCTAGTTTTGATTTTCCCACTCTCATCACAAATTGTAAAAGCTACAGGGGTGGTGACAGAAACAGCATGGGCAGGAGCTGCTTACAACCTAATGCTTTATATGTTGGCTAGCCATATTTTAGGGGCTTGCTGGTATCTTCTATCAATCGAGCGACAAGAAGCGTGTTGGAGAAGTGTATGCGATTTGGAGAAGTCATTTTGTGAATATGGATTCTTTGACTGCCACAGGGTTAAAGATGCCCATAGGGTGTCCTGGTTTATAGCAAGTAATATCACAAATTTATGCTCACCAAATGCAAAAGATGAATTCTATCAGTTTGGTATATACGCTGATGCCGTGACTTCTGAAGTTACATCCTCATCATTCTTCAACAAGTACTTCTTCTGCCTGTGGTGGGGTCTAAGGAATTTGAGTTCTCTGGGACAAGGCCTTCTTACCAGCACATATGTTGGAGAGATAATGGTCGCCATTGTTATTGCAACTCTTGGATTGGTTCTCTTTGCGTTACTAATCGGTAACATGCAGACATATCTCCAATCAACTACTGTTCGCTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGACAACTACCTCCAGAACTAAGAGAATCTGTGCGTAAATACGACCAATACAAATGGCTGGCCACACGAGGAGTAGATGAAGAATCTCTTCTCAAAGGACTCCCAGTGGATCTTCAGAGAGACATCAAACGCCACCTTTGTCTCGATCTAGTTCGAGGAGTGCCATTATTTGATCAAATGGATGAGAGAATGTTGGATGCAATCTGTGAAAGGCTGAAGCCTGCACTGTGCACAGAGGGAACTTTCCTTGTGCGAGAGGGTGATCCTGTCAATGAGATGCTCTTCATAATCAGGGGCCATCTTGATTCCTACACCACCAACGGGGGAAGGGCCGGGTTCTTCAACTCGTGCCGCATTGGGCCGGGCGATTTCTGCGGCGAGGAGCTTCTAACTTGGGCCTTGGACCCACGGCCCAGTGTGATCCTCCCTTCGTCCACTCGAACAGTGAAAGCCATATCGGAAGTGGAGGCCTTTGCACTGATAGCGGAAGACCTGAAATTCGTGGCGTCACAGTTCAGAAGACTGCACAGCAAACAACTGAGACACAAATTCAGGTTTTACTCACACCAGTGGAGAACCTGGGCCGCGTGTTTCGTTCAAGCCGCGTGGAGAAGGCATAAGAAGAGGAAGGAACTTGCTGAACTAAGGGCCAGAGCCATTAACAATGCAGAGCCTGAGACACCAACGTATGCCAAAAGGGTCGCTAGGAGTACTAGGAAAGCTGTTCATGTCTCTTCTCCCACAAATTCTGGAGTTGTGTCCTCTTTGCCGAAGCCAGCAGAACCAGATTTCTCAGTGGATGAACGATATTAA 2253 0.4403 MLLTICTFLMQSLLVLLDNQQTFDRKKKHQVSVFKLLPDSYFLLKRASYFWNIEMAFGNSRSARSEDDPELAKFPASIGDNGFKIKYHIDGTQIPEPSSKMAKKKVTGKFLKARMLSRVFSEDYDRVKRRVLDPRGQIIHRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGITPEVILTLVRSVGDVFYVIQILLKFRTAFVAPSSRVFGRGELVVGYSKIAVRYLKKSFWLDFVAALPLPQVLIWIIIPTLKGSTMGNTKNVLRFIIVFQYFPRLVLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSFCEYGFFDCHRVKDAHRVSWFIASNITNLCSPNAKDEFYQFGIYADAVTSEVTSSSFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMVAIVIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWLATRGVDEESLLKGLPVDLQRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRHKKRKELAELRARAINNAEPETPTYAKRVARSTRKAVHVSSPTNSGVVSSLPKPAEPDFSVDERY 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12871g00005 750 MobiDBLite consensus disorder prediction 715 750 - -
Vium12871g00005 750 CDD CAP_ED 536 667 IPR000595 -
Vium12871g00005 750 MobiDBLite consensus disorder prediction 721 735 - -
Vium12871g00005 750 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 116 744 - -
Vium12871g00005 750 FunFam Cyclic nucleotide-gated ion channel 1 534 652 - -
Vium12871g00005 750 SUPERFAMILY cAMP-binding domain-like 466 662 IPR018490 -
Vium12871g00005 750 SUPERFAMILY Voltage-gated potassium channels 133 458 - -
Vium12871g00005 750 Gene3D Helix hairpin bin 463 527 - -
Vium12871g00005 750 SMART cnmp_10 536 667 IPR000595 -
Vium12871g00005 750 FunFam Cyclic nucleotide-gated ion channel 1 463 527 - -
Vium12871g00005 750 ProSiteProfiles cAMP/cGMP binding motif profile. 536 633 IPR000595 -
Vium12871g00005 750 PRINTS EAG/ELK/ERG potassium channel family signature 197 206 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium12871g00005 750 PRINTS EAG/ELK/ERG potassium channel family signature 314 324 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium12871g00005 750 PRINTS EAG/ELK/ERG potassium channel family signature 499 506 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium12871g00005 750 PRINTS EAG/ELK/ERG potassium channel family signature 405 422 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium12871g00005 750 PRINTS EAG/ELK/ERG potassium channel family signature 449 458 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium12871g00005 750 Gene3D - 144 460 - -
Vium12871g00005 750 Gene3D Jelly Rolls 534 654 IPR014710 -
Vium12871g00005 750 Pfam Ion transport protein 142 463 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12871g00005 Vium-Chr12871 35448 39436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12871g00005 108 747 Ion Channels AT2G28260 77.031 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12871g00005 K05391 - gmx:100786868 1263.44