Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12870g00001 ATGGAGGGAGCTTCATCCTCATCTTCATTTGTGAATTTTCCTTCCACTGCTGAAGATCATCACTTGGTCGACGATTTCTACTTTTCAGCACTTTACGATGATGAAGAAATATTTCCAATTTCTGATGAGAAATATGCTGAAGAGCTGCAACTACAAGAAGCACTCTATTCCTCCACGATGTCAAGTGGTATGGTTGAAAAGAAAGCTGTTCAAGTGGATGTAAATGATGTCGGTGACTTATCTTTGAGAAACCTCAAGAGGAAACTTAAAGAGATCGGTGAAGCTTCCCTTGCACACTGTGGTATTTGCATGGATGCCAAGCCTGGGAAAGAAATGTTCAGGAACCGAAACTGTTCTCACCTTTATTGTGATTATTGCATTGGAGGACATGTTGCTGCGAAAATTCAGGAAAATATATCAATGGTGAAATGTCCTGAGCCAAAATGTAAAGCGGTTATAGAGCCAGACAACTGTTGTTCAATTATCCCTAAAGAAGTGTTTGATAGATGGGAAAATTCTCTTTGTGAGAATGTGGTGCTTGGATCACAAAAGTTTTACTGTCCCTTTAAGGATTGTTCAGCTATGATGATATGTGAAGCAGGGGAAGTTGTGACTTCATCGGAGTGTCCACATTGCAATAGACTGTTTTGTGCACAGTGCAAGTTTTCGTGGCATGCAGGAATAAACTGTGTGGAGTTTCAGATGTCGAAAAGAGAGAAAGGAGAGAACGGAGACTCATTGGTGATTGAACTTGCAAAGACTAAACGTTGGAGAAGATGTCCAAAATGCAAAATTTACGTAGAAAGAATTGATGGATGTACACGTATTTCATGCAGATGTGGCCATGAATTTTGCTATGCTTGTGGATTGTCTTGGACTTCTAAACATTATTCGTGTGTAGTTCGTTAG 909 0.3993 MEGASSSSSFVNFPSTAEDHHLVDDFYFSALYDDEEIFPISDEKYAEELQLQEALYSSTMSSGMVEKKAVQVDVNDVGDLSLRNLKRKLKEIGEASLAHCGICMDAKPGKEMFRNRNCSHLYCDYCIGGHVAAKIQENISMVKCPEPKCKAVIEPDNCCSIIPKEVFDRWENSLCENVVLGSQKFYCPFKDCSAMMICEAGEVVTSSECPHCNRLFCAQCKFSWHAGINCVEFQMSKREKGENGDSLVIELAKTKRWRRCPKCKIYVERIDGCTRISCRCGHEFCYACGLSWTSKHYSCVVR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12870g00001 302 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 62 293 IPR031127 GO:0004842|GO:0016567
Vium12870g00001 302 SMART ibrneu5 168 230 IPR002867 GO:0008270
Vium12870g00001 302 SMART ibrneu5 245 299 IPR002867 GO:0008270
Vium12870g00001 302 ProSiteProfiles TRIAD supradomain profile. 96 302 IPR044066 -
Vium12870g00001 302 Gene3D - 228 301 - -
Vium12870g00001 302 FunFam RBR-type E3 ubiquitin transferase 95 181 - -
Vium12870g00001 302 SUPERFAMILY RING/U-box 246 298 - -
Vium12870g00001 302 Pfam IBR domain, a half RING-finger domain 251 299 IPR002867 GO:0008270
Vium12870g00001 302 Pfam IBR domain, a half RING-finger domain 172 230 IPR002867 GO:0008270
Vium12870g00001 302 SUPERFAMILY RING/U-box 96 177 - -
Vium12870g00001 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 180 IPR013083 -
Vium12870g00001 302 SUPERFAMILY RING/U-box 178 235 - -
Vium12870g00001 302 ProSiteProfiles Zinc finger RING-type profile. 100 148 IPR001841 -
Vium12870g00001 302 CDD Rcat_RBR_unk 256 292 - -
Vium12870g00001 302 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Vium12870g00001 302 CDD BRcat_RBR_unk 181 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12870g00001 Vium-Chr12870 3221 5035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12870g00001 99 299 C3H Transcription Factor Family AT2G31760 31.579 1.14e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12870g00001 K11975 - gmx:100815626 396.356