Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1285g00002 ATGTATGGGAGAACAGCTTGCCAACTTGTGAAAGAATTTGCAAGCGGAGATAAGGGCCAGCTTGTGTCATTCAATAGTGACTTGTTTCAACAAGTAGTTGCAGAATGCAGTCAACATCTCCTTGAACTGCAGTCCCTGATAAGGAAGATGGAGGAAGAACGTTTGGATATCCAAACAGTAAGAAATGCAGATTATTACGGAGCGCTTATCCATCATCTTACTTTAGTCCGAAATAAACGTTGCCTAATGGCTTATGTGTATAATCGAGCAGAAATTATACGGAACTTATTATGGAAGATAGGGCATGTGCTTCCTCAAGAAATTGAAGAGAAGCTTTCTCATGCGGAGGGAGAATATTTCAAGAAGCATTCTGCAGCATTGAAATATTATATGTCGAAAGTGATGGTTGATCTGACTGTGGATATGATACCACCAAAAGATCCTTACATCAAAGTAAGGGTTCTTGATGACATTGGAGACGGCATTCTGCTTAGTGATGATAAGACTGCAAATTTTGCCTGCCATTCAATGCATCTTCTGAAGCGAACTGATGCTGAGCAATTTATCTCACGGGGTCAAATGGAGGAACTATCTGGTTGA 600 0.405 MYGRTACQLVKEFASGDKGQLVSFNSDLFQQVVAECSQHLLELQSLIRKMEEERLDIQTVRNADYYGALIHHLTLVRNKRCLMAYVYNRAEIIRNLLWKIGHVLPQEIEEKLSHAEGEYFKKHSAALKYYMSKVMVDLTVDMIPPKDPYIKVRVLDDIGDGILLSDDKTANFACHSMHLLKRTDAEQFISRGQMEELSG 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1285g00002 199 Coils Coil 33 63 - -
Vium1285g00002 199 PANTHER PARTNER OF SLD5 1 198 IPR005339 GO:0000811|GO:0006260
Vium1285g00002 199 SUPERFAMILY GINS helical bundle-like 1 146 IPR036224 -
Vium1285g00002 199 Pfam GINS complex protein 45 116 IPR021151 -
Vium1285g00002 199 CDD GINS_B_Psf1 148 197 - -
Vium1285g00002 199 Gene3D - 1 134 - -
Vium1285g00002 199 CDD GINS_A_psf1 3 134 IPR005339 GO:0000811|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1285g00002 1 199 Core DNA Replication Machinery Family AT1G80190 66.832 6.18e-99 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1285g00002 K10732 - qsa:O6P43_027860 320.087