Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12846g00001 ATGGCATCTTCTTCAGACTCTTGGATGAAGGAATATAATGAAGCTGTAAAACTTGCTGATGATATCACTGGTATGATTGCTGAACGGAGTTCGTTTCCTGCATCTGGACCCGAAACCCAGCGGCATGGATCTGCTATAAGAAGGAAGATTACGATATTAGGGACCAGGCTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCGAAAACTGAGAAGGAGATGAATCGTCGCAAGGATATGCTTGGAAACTTGAGGACCAAAGTTAACCAAATGGCTTCAACATTAAACATGTCAAGCTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAACAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCAGTGAATGAAGAGCTGGATCTACACACCAGACTCATTGATGACTTAGACGAACATGTAGATGTTACAGATTCCCGGCTGAGGCGAGTGCAAAAGAACTTGGCAGTTTTGAACAAACGTACCAAGGGTGGTTGTTCCTGCTTGTGCATGCTTCTATCAGTGATCGGTATAGTGGTTTTGGTTGTTGTCATATGGCTGTTGATCAAATATTTGTAA 690 0.4261 MASSSDSWMKEYNEAVKLADDITGMIAERSSFPASGPETQRHGSAIRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDMLGNLRTKVNQMASTLNMSSFANRDSLLGPEIKSDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLVVVIWLLIKYL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12846g00001 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Vium12846g00001 229 Gene3D - 135 197 - -
Vium12846g00001 229 Pfam SNARE domain 170 221 IPR000727 -
Vium12846g00001 229 SUPERFAMILY SNARE fusion complex 124 194 - -
Vium12846g00001 229 CDD SNARE_Qc 136 193 - -
Vium12846g00001 229 FunFam syntaxin-51 isoform X2 135 197 - -
Vium12846g00001 229 SMART tSNARE_6 128 195 IPR000727 -
Vium12846g00001 229 PANTHER SYNTAXIN 39 216 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12846g00001 Vium-Chr12846 2836 7008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12846g00001 1 229 SNARE and Associated Proteins AT1G16240 71.552 8.83e-123 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12846g00001 K08503 - gmx:100794038 393.66