Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12828g00003 ATGATGCCTCCTTCTCAGCCACCCCATTGGGCCCCATCACCATCTCCGTCTGCATCTCCGACCCCAACGCCCACACCAATACTCAACAAATCATTCCTACCACCGCCGTCCAATACGCCGGCGGTTGACTTCAGCCCCCCACTCATAGCAATGGTCGTTGTCGTCGCCGCCGCCTTTCTCGTCGTAACCTACTCTCGTCTCATCGCGCGCCATCTCAGGCCTCCTATCCACCGCCTCCTACACCGCTTCCGCCGCCGGCGATTCCCCCCGTCTTCCGTTGGCGACCTCGAGTCCTTACCCTACGAGTCTCCCTTTGACGGTCCCCGCGTATTCTCTCCATACGGTTTAGACGAAACGGTGATTAAAACGATACCGTTTTCGCTGTACACCGCGAAATACGACGCTCGTTTCGAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTGGAATTCGAAGACGAAGAATACGTGAGAACACTTCCCGTTTGTTCACACACGTTCCACGTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGCCCTCTCTGCCGCGCAGGTGTCCTCTGCGCCGATTCGCCTTTCACTCCAATGATGGCCGCAAGAATCCGACCGAGCCTCGACGACGACACAATTCTTCACCGCATCAGCTTAGACCCTCTCATCGACCCCCCACCGCCTGTGGCAATATCGTCCGTGCCGGAGATAACACCCTGCATCGACGAACAATCTCCGAGGAGGAACCAGAACCACGCGAACGTCAACTCAGAAGATTGTTTTAGGGATTTTCTGCTGAAGAGATCTTATTCGTTTGGATTTGAACGGAGTGTCGCGTCGGAGAGGATGGTGATGGAAGCCACCACTGCGTCGCCATGGCGATACCGAAGAGGGAGTAATAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGTTCTTTGGGGAAACCAAGGGTGTTTTCGTTTCGGTATTACAGAGGGATGAAATCACCGTTCTTCAGGCGGAGGGGATTCTTCCCGCTGTCGGAGTCCAGCGTGAGGTACGGCGGCGGCGGGAGCTCGTCGCGGCGGAGCAAGTCGATTGCAAGCCCAATGTTTCTTCGGTCGTCGGGTCTGGCAGCGGCGGCTTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTGTCGCCCGAGAGATTTAACCGGAGGTGA 1197 0.5748 MMPPSQPPHWAPSPSPSASPTPTPTPILNKSFLPPPSNTPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPIHRLLHRFRRRRFPPSSVGDLESLPYESPFDGPRVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLLEFEDEEYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILHRISLDPLIDPPPPVAISSVPEITPCIDEQSPRRNQNHANVNSEDCFRDFLLKRSYSFGFERSVASERMVMEATTASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12828g00003 398 PANTHER RING-H2 FINGER PROTEIN ATL16 32 212 IPR044600 GO:0016567|GO:0016740
Vium12828g00003 398 Pfam Ring finger domain 142 186 IPR001841 -
Vium12828g00003 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 190 IPR013083 -
Vium12828g00003 398 FunFam RING-H2 finger protein ATL65 109 190 - -
Vium12828g00003 398 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Vium12828g00003 398 MobiDBLite consensus disorder prediction 1 32 - -
Vium12828g00003 398 SUPERFAMILY RING/U-box 128 191 - -
Vium12828g00003 398 CDD RING-H2_EL5-like 143 186 - -
Vium12828g00003 398 SMART ring_2 144 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12828g00003 Vium-Chr12828 8004 11100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12828g00003 37 398 C3H Transcription Factor Family AT3G18930 50.877 1.29e-95 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12828g00003 - K19041 gmx:100806115 630.172