Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12827g00001 ATGGAGTGCAACAAAGATGAGGCAGTTCGGGCCAAAGAAATAGCAGAGAGGAAATTTTCAGAAAGGGAATATGTTGGTGCAAAGAAATTTGCTCTCAAGGCTCAAAATCTGTATCCTGATTTGGAGGATATTACCCAGCTCTTGACAACAATTGATATTTATATATCTGCTGACAATAAAGTAAGCGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGTCCCTTTGCTGATGAGGAGACTGTCAGGAAGCAATACAGGAAGCTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTGGGTGCAGAGGGTGCATTTAAGTTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTCGAATATAACCAGAAGAGGAGTTTGAAAGGATTCCAGCATAATACTTCCAACCATGTTGGATCTAAATCAGATGCACCCAGTTCAAATGGTTTTTACAATTTAAAGAAGAATGTAACTTCAAATGTCAGGACTGGAAATAATAATGGTCGGGCACCTTCAACTGCAGTTCCTCCTCCACATAAAAAAGCTGATACCTTTTGGACGATCTGCAATCGGTGCAGGACACATTATGAATATCTCAGGATTTATTTGAATCACACCCTTTTATGTCCAAACTGTAATGAAGCTTTTGTTGCTGTAGAGAGGGGTCCACCACCAAATGTTTTTAAGCCACCAAATTGGTCTTCTCATCAACAACGACATCAAAATTCTCAACACCATGCTGGAAGTAATAATACAAACTTTCAGTGGGGTTCTCACAATAGAATGGCTGGTTTTGGTAGCACAGATGGATCAACATCTGTTGCAGCTCAAGCTGCAAGTGTTGTGCAACAGGCAAGTGAGAAAGTAAGGAGAGAGGGTTCCTTTCACAAAGCTGAAAAACCTATGAAAAAAAGAAGGACAGATGATATTCGAGTTAATGGCTATCAAGGATACATGGCTAATCATATGACCGGGGGACATGGAGCAGCTGGCTTGGGAAGCTTTTCTGAATCAGGAAAGGCTAACTTGGAAGCAGAAAGGAATTATGGTTTTTCAGGTCTGCCTGGCAAGCATTACAGCACAAGGGAATTGTCAATGTTTGAATTACGAAACATGTTGATGGACAAGTCACGCAATGTAATTCGTAAGAAACTTCAAGAATGGAAATCAATGGCTGAAGCTAAGATTAACAGGGATAAAGAAAATAAGAGACAGAAAAGCACATTAACAACTGGTTCAGAAAAGCTGAGAGAGCCTGCTGTCAATGGTAACAGGCATCCAAACATTGATTCTTTCCCTGTCAGAAGTGACCAAGCTTATGTTACCATCAATGTTCCAGACCCTGATTTTCATAACTTTGATTTGGACAGAGATGAAAGTTCCTTTGCCGAGGACCAGGTGTGGGCTGCGTACGACGAAGATGATGGAATGCCTCGATATTACGCTAGAATTCACAAGGTGATCTCTATAAAGCCATTTAAAATGAGGATCAGTTGGCTTAATTCTCGAAGCAACAGCGAATTGGGCCCAATAGATTGGGTGGGCTCTGGTTTTTATAAGACTTGTGGGGATTTCAGAACTGGCAAGCACGAAATATCTGAATCATTAAATTCTTTCTCTCACAAGGTTAGGTGGACAAAAGGCACGAGAGGTGTTGTTCGCATCTTTCCTGGAAAGGGGGAAGTCTGGGCTCTTTACAGGAACTGGTCTCCTGATTGGAATGAACATACCCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTGCTCGAAGATTTCAATGAAGAACAGGGCATATTAGTTACCCCTCTAGTTAAGGTAATTGGTTTTAGGACTGTGTTTCAAAGGCATGCAGACCGTGATCAGGAGAAGAGGATTCTTAAAGAGGAAATGTTTCGATTCTCTCATCAGGTTCCTAATTGCTTGTTGACTGGCCAAGAAGCTCAGAATGCTCCAAAGGGTTGTCGAGAGTTGGATCCAGCCGCTACTCCTTTAGACCTCCTTCAGATAACCACAGAAGCTAATGAGACATCAGATAATGCATAG 2064 0.4176 MECNKDEAVRAKEIAERKFSEREYVGAKKFALKAQNLYPDLEDITQLLTTIDIYISADNKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTSNHVGSKSDAPSSNGFYNLKKNVTSNVRTGNNNGRAPSTAVPPPHKKADTFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAVERGPPPNVFKPPNWSSHQQRHQNSQHHAGSNNTNFQWGSHNRMAGFGSTDGSTSVAAQAASVVQQASEKVRREGSFHKAEKPMKKRRTDDIRVNGYQGYMANHMTGGHGAAGLGSFSESGKANLEAERNYGFSGLPGKHYSTRELSMFELRNMLMDKSRNVIRKKLQEWKSMAEAKINRDKENKRQKSTLTTGSEKLREPAVNGNRHPNIDSFPVRSDQAYVTINVPDPDFHNFDLDRDESSFAEDQVWAAYDEDDGMPRYYARIHKVISIKPFKMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEISESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLEDFNEEQGILVTPLVKVIGFRTVFQRHADRDQEKRILKEEMFRFSHQVPNCLLTGQEAQNAPKGCRELDPAATPLDLLQITTEANETSDNA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12827g00001 687 MobiDBLite consensus disorder prediction 294 310 - -
Vium12827g00001 687 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vium12827g00001 687 Pfam DnaJ domain 66 127 IPR001623 -
Vium12827g00001 687 SUPERFAMILY Chaperone J-domain 55 126 IPR036869 -
Vium12827g00001 687 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vium12827g00001 687 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vium12827g00001 687 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vium12827g00001 687 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vium12827g00001 687 MobiDBLite consensus disorder prediction 402 434 - -
Vium12827g00001 687 MobiDBLite consensus disorder prediction 237 256 - -
Vium12827g00001 687 Gene3D DnaJ domain 63 174 IPR036869 -
Vium12827g00001 687 MobiDBLite consensus disorder prediction 290 310 - -
Vium12827g00001 687 Pfam Domain of unknown function (DUF3444) 447 653 IPR024593 -
Vium12827g00001 687 PANTHER BNAC03G44070D PROTEIN 1 670 - -
Vium12827g00001 687 CDD DnaJ 66 119 IPR001623 -
Vium12827g00001 687 MobiDBLite consensus disorder prediction 402 416 - -
Vium12827g00001 687 SMART dnaj_3 65 122 IPR001623 -
Vium12827g00001 687 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12827g00001 Vium-Chr12827 4260 8982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12827g00001 4 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.769 2.04e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12827g00001 - - gmx:100814722 1281.93