Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12818g00006 ATGGAGGGTGGGAACATAAGACAGTGGTTGAACTTTCTGGTTTGTGCACTGCTGTTTCTGATAGCAGAGGCTTCTTATGTGCCAATCACCTATCTTCAGAACGCTGTAGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAGGGGATCTGGAACAGGGATTAACAATTGGTTGGTTGCTTTTGAGGGAGGAGGATGGTGCAACAATGTCACTACTTGTCTCTCTCGCAAGACCAATCGTTTAGGTTCATCTAAGCAAATGGCAAAGCAAATTGCCTTTTCGGGAATTATGAGCAACATGCAAATCTTTAATCCAGATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGCGATGGTTCATCTTTTACTGGTGATGTAGAAGAAGTCAATCCAGTTACTAAGTTGCACTTTAGAGGAGCAAGGATTTTTGCTGCTGTCATGGAGGATTTACTAGCAAAAGGAATGGAAAATGCTCGAAATGCAATTATTTCTGGATGTTCAGCTGGAGGATTAACTTCAGTACTGCATTGTGATCGCTTCCGAGCTCTATTACCTGGAGGAGCCAGAGTGAAATGCCTCTCAGATGCTGGTTATTTTATCAATGCAAGGGATGTCACTGGGGCATACCACATTCAACAGTACTTCAGTCAAGTTGTTACTACACATGGCTCTGCAAGGAATTTGCCTCAGTCATGCACTTCAAGACTTAGCCCAAAGCTATGCTTTTTCCCACAATATTTGGCGTCACATATCACTACGCCGATCTTCTTTGTAAACGCGGCATACGACTCATGGCAGATTAAGAACATTTTGGCACCTGGTGTTGCTGATCCTGAAGGCCATTGGCATAGCTGTAAGCTGGATATAAACAACTGCTCACCTGATCAATTAGATCTAATGCAAGGCTTCAGGACAGAATTTTTAAGGGCATTGACAGTGCTAGGCAACTCTTCATATAAAGGAATGTTTATAGACTCTTGCTATGCCCACTGCCAAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGGAAAAGACAACAATTGCAAAGGCTGTAGCAGACTGGTTTTATGAAAGAAGGACATTCCATCAGATAGATTGCCCTTACCCCTGCAACCCCACTTGTCACAACCGCGTTTTCGGACCAGAAGACGACCACCAAGGAAAAAATGTGACCTCGAAAGGAACGTCAGATGCATCAGCCAGAAAGCTCAATTTTCCGAAACTAACAAACAAGGCACAATGGATTGAGCTTGTGTGCATTAATGGAGGAATCAATGGGCTTCTACTAACGTTGGGTCTTATGAGGAAGCAGGAAAAAGCCAATCCCATTGGATTGAACAATTTTGTGGCCTTGTACAGACTGCAATAA 1404 0.433 MEGGNIRQWLNFLVCALLFLIAEASYVPITYLQNAVAKGAVCLDGSPPAYHFDRGSGTGINNWLVAFEGGGWCNNVTTCLSRKTNRLGSSKQMAKQIAFSGIMSNMQIFNPDFYNWNRIKVRYCDGSSFTGDVEEVNPVTKLHFRGARIFAAVMEDLLAKGMENARNAIISGCSAGGLTSVLHCDRFRALLPGGARVKCLSDAGYFINARDVTGAYHIQQYFSQVVTTHGSARNLPQSCTSRLSPKLCFFPQYLASHITTPIFFVNAAYDSWQIKNILAPGVADPEGHWHSCKLDINNCSPDQLDLMQGFRTEFLRALTVLGNSSYKGMFIDSCYAHCQTEMQETWLRSDSPELEKTTIAKAVADWFYERRTFHQIDCPYPCNPTCHNRVFGPEDDHQGKNVTSKGTSDASARKLNFPKLTNKAQWIELVCINGGINGLLLTLGLMRKQEKANPIGLNNFVALYRLQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12818g00006 467 SUPERFAMILY alpha/beta-Hydrolases 87 272 IPR029058 -
Vium12818g00006 467 PANTHER NOTUM-RELATED 17 388 IPR004963 GO:0016787
Vium12818g00006 467 Pfam Pectinacetylesterase 22 372 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12818g00006 Vium-Chr12818 24589 31048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12818g00006 6 395 Carbohydrate Esterase AT4G19420 62.588 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12818g00006 K19882 - gmx:100818146 829.706