Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12818g00004 ATGGGGTCCAGTGGCAGCAAAGCCAGGTCGTCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTCCCATCTTATTGTCTGGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAAAATAAAGTAAACCGAGATGATGTGACATACACCAGTGGCAATGAAATAGACTCAGATGAAGGGAAGACAGAGTCTTTTAGAAAGGTGAAACCTGGTAAGTCTGATGAAGTGCCTTCTAACATTGACCTTGAAGAGTGGCGTCACAGTGCATCAAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAACCACTCCTTGAACCCCTCAAGTCGGTTCTTGTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGATCATCTAGGCCTTGCCCTGTTTCTTCAACAAGTATCTCAATATTTAATGATGAAGATGAGCTTAGTCTACATTCAGGGCCTCCTGGCAGCTTGATTAATAGAAATGAAACTCAACACCGTAGTGATTTGCTCAATGCATCTTTTGTTAGTCAAGTGCCTATGCAGTGTCATGAAGAAGCTTCTAATAATTTGCGTCCTAATGCCCCAGCATTGGTTTCACCTGGTAATTTGGCTAGTAGTCGCCCAGTTTCTTCTATCCAGGATGTGGGTAGAGATGGAAATGGTGCAAGAGAAGTGCCTGATGCCAACATGTTTTCTCCAAGAATTCATACTGATACAGAAAATATTGAGACTAGACATACTGATAGGCGAAATGGAGCTCGAGAACCTGTGGAACGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAACGTTGTCAGACTTCACCTTTTGCCCCATGCAACGAGAGAGAGAAGTAAGAGAGGCTGGTCAAGAGAATGGAAGACGAGTAGGGGATAGAGAAGCAAGAGTGTCACCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCTTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGTTCTAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTGGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACACAGAAACGGTCGTTGTGCATGCAGAACCAATAGTCGGGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTGTTTGAAGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCCATTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCGCTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCAAGGGAGAACTAA 1707 0.4446 MGSSGSKARSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNRDDVTYTSGNEIDSDEGKTESFRKVKPGKSDEVPSNIDLEEWRHSASRTGSSSAHSSSNHSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTSISIFNDEDELSLHSGPPGSLINRNETQHRSDLLNASFVSQVPMQCHEEASNNLRPNAPALVSPGNLASSRPVSSIQDVGRDGNGAREVPDANMFSPRIHTDTENIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREVREAGQENGRRVGDREARVSPTGRNASNSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRTNSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSIPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICVSDSLPREN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12818g00004 568 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Vium12818g00004 568 FunFam Putative RING zinc finger domain superfamily protein 482 560 - -
Vium12818g00004 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 560 IPR013083 -
Vium12818g00004 568 MobiDBLite consensus disorder prediction 316 333 - -
Vium12818g00004 568 Pfam Ring finger domain 512 555 IPR001841 -
Vium12818g00004 568 MobiDBLite consensus disorder prediction 316 357 - -
Vium12818g00004 568 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
Vium12818g00004 568 MobiDBLite consensus disorder prediction 1 19 - -
Vium12818g00004 568 MobiDBLite consensus disorder prediction 1 120 - -
Vium12818g00004 568 MobiDBLite consensus disorder prediction 336 357 - -
Vium12818g00004 568 MobiDBLite consensus disorder prediction 69 101 - -
Vium12818g00004 568 MobiDBLite consensus disorder prediction 102 120 - -
Vium12818g00004 568 MobiDBLite consensus disorder prediction 221 248 - -
Vium12818g00004 568 SUPERFAMILY RING/U-box 491 561 - -
Vium12818g00004 568 SMART ring_2 513 554 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12818g00004 Vium-Chr12818 17322 22432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12818g00004 232 562 C3H Transcription Factor Family AT5G45290 61.947 1.37e-119 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12818g00004 - - gmx:100815830 936.791