Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12818g00003 ATGGGGTCCAGTGGCAGCAAAGCCAGGTCGTCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTCCCATCTTATTGTCTGGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAAAATAAAGTAAACCGAGATGATGTGACATACACCAGTGGCAATGAAATAGACTCAGATGAAGGGAAGACAGAGTCTTTTAGAAAGGTGAAACCTGGTAAGTCTGATGAAGTGCCTTCTAACATTGACCTTGAAGAGTGGCGTCACAGTGCATCAAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAACCACTCCTTGAACCCCTCAAGTCGGTTCTTGTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGATCATCTAGGCCTTGCCCTGTTTCTTCAACAAGTATCTCAATATTTAATGATGAAGATGAGCTTAGTCTACATTCAGGGCCTCCTGGCAGCTTGATTAATAGAAATGAAACTCAACACCGTAGTGATTTGCTCAATGCATCTTTTGTTAGTCAAGTGCCTATGCAGTGTCATGAAGAAGCTTCTAATAATTTGCGTCCTAATGCCCCAGCATTGGTTTCACCTGGTAATTTGGCTAGTAGTCGCCCAGTTTCTTCTATCCAGGATGTGGGTAGAGATGGAAATGGTGCAAGAGAAGTGCCTGATGCCAACATGTTTTCTCCAAGAATTCATACTGATACAGAAAATATTGAGACTAGACATACTGATAGGCGAAATGGAGCTCGAGAACCTGTGGAACGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAACGTTGTCAGACTTCACCTTTTGCCCCATGCAACGAGAGAGAGAAGTAAGAGAGGCTGGTCAAGAGAATGGAAGACGAGTAGGGGATAGAGAAGCAAGAGTGTCACCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCTTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGTTCTAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTGGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACACAGAAACGGTCGTTGTGCATGCAGAACCAATAGTCGGGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTGTTTGAACAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCCATTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCGCTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCAAGGGAGAACTAA 1686 0.4448 MGSSGSKARSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNRDDVTYTSGNEIDSDEGKTESFRKVKPGKSDEVPSNIDLEEWRHSASRTGSSSAHSSSNHSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTSISIFNDEDELSLHSGPPGSLINRNETQHRSDLLNASFVSQVPMQCHEEASNNLRPNAPALVSPGNLASSRPVSSIQDVGRDGNGAREVPDANMFSPRIHTDTENIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREVREAGQENGRRVGDREARVSPTGRNASNSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRTNSRDTNSNDDTNARASISRIVMLAEALFEQSVVLSSRPSVSSIGSIPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICVSDSLPREN 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12818g00003 561 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 560 - -
Vium12818g00003 561 MobiDBLite consensus disorder prediction 316 333 - -
Vium12818g00003 561 FunFam Putative RING zinc finger domain superfamily protein 475 553 - -
Vium12818g00003 561 MobiDBLite consensus disorder prediction 316 357 - -
Vium12818g00003 561 Pfam Ring finger domain 505 548 IPR001841 -
Vium12818g00003 561 MobiDBLite consensus disorder prediction 1 19 - -
Vium12818g00003 561 MobiDBLite consensus disorder prediction 336 357 - -
Vium12818g00003 561 MobiDBLite consensus disorder prediction 1 120 - -
Vium12818g00003 561 ProSiteProfiles Zinc finger RING-type profile. 506 548 IPR001841 -
Vium12818g00003 561 MobiDBLite consensus disorder prediction 69 101 - -
Vium12818g00003 561 MobiDBLite consensus disorder prediction 102 120 - -
Vium12818g00003 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 553 IPR013083 -
Vium12818g00003 561 MobiDBLite consensus disorder prediction 221 248 - -
Vium12818g00003 561 SUPERFAMILY RING/U-box 484 554 - -
Vium12818g00003 561 SMART ring_2 506 547 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12818g00003 Vium-Chr12818 17322 22433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12818g00003 232 555 C3H Transcription Factor Family AT5G45290 59.882 1.52e-111 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12818g00003 - - gmx:100815830 920.613