Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12818g00002 ATGAAGAGCATAAACGACGACGGTTCCACGCAAGATCTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAACTCACCCAAACTCTAACCCCCAACCTCACCCTCACCCGCGCCGTCCGCGGGGTTTCGCGGCGGCGGCGGCGGCGGTCACTACCAATTCCGTCGCCAAGGGAAAGAAGGAGAGAGAGAAGGAGAAGGAGCGAACCAAGCTCCGGGAGCGACATCGCCGGGCCATCACCAGTCGCATGCTCGCTGGCCTCCGCCAGTACGGCAATTTCCCCCTGCCCGCGCGTGCAGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGTTGGGTTGTTGACGCCGATGGAACCACCTATCGCCAGTGTCCCCCTCCCTCTCACATGGGGTCATTTGCGGCTAAATCAGTCGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTAAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAACGAGAAATATACAAATGCAAGCCCTATCAATACTGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCACGAAAATGATTTTACTGGCACACCATATGTTCCTGTTTATGTAAAGCTTCCGGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAAGCAGGAGCTAATGCATATGAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCGCAGAAATATGTGTGGTCTGGCTATAGGGAGCTTTTTAACATCGTTAGAAAATTCAAACTTAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGAAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGAGTTCTCAAAGGAAGAACTGGAATTGAGGTCTATTTCGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTTGAAGTTGGACTTGGAGCATCCGGAGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGGAGAGCAGCCAAATTACGTGGTCATTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCGCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAATTACTATGGACGATTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTCGAGGAGACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTACAAGACTCCTAGTCATGCGGCAGAGTTGACAGCAGGATATCACAACCCAACAAATCAGGATGGGTACTTTCCTGTGTTTGAGGTTTTAAGAAAACATGCTGTCACCATGAAATTCGTCTGCTTAGGGTTTCATCTTTCCAGCCAGGAAGCTAACGAATCATTGATTGATCCTGAGGGTCTGAGTTGGCAGGTGTTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGGTGGAGAGAATGCACTCCTCTGCTACGATAGAGAAGGGTACAAGAGATTGGTTGACACCGCAAAGCCGAGAAATGATCCTGATCATCGACATTTTTCATTCTTTGTTTACCAGCAACCATCTTTGCTGCAGGCTAATGTTTGCTTGTCCGATTTGGATTTCTTCGTTAAATGCATGCATGGTGAGATGACGGATCTGTAA 1977 0.4638 MKSINDDGSTQDLDPQSDHSSDYLTHPNSNPQPHPHPRRPRGFAAAAAAVTTNSVAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAAKSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKNEKYTNASPINTVDCLEADQLMQDIHSGVHENDFTGTPYVPVYVKLPAGIINKFCQLIDPEGIKQELMHMKSLNVDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIVRKFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYFPVFEVLRKHAVTMKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAGGENALLCYDREGYKRLVDTAKPRNDPDHRHFSFFVYQQPSLLQANVCLSDLDFFVKCMHGEMTDL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12818g00002 658 SUPERFAMILY (Trans)glycosidases 221 655 IPR017853 -
Vium12818g00002 658 Gene3D Glycosidases 217 658 - -
Vium12818g00002 658 MobiDBLite consensus disorder prediction 1 70 - -
Vium12818g00002 658 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 160 654 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 MobiDBLite consensus disorder prediction 1 29 - -
Vium12818g00002 658 Pfam Glycosyl hydrolase family 14 244 619 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 521 532 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 504 520 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 539 562 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 577 599 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 261 275 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 282 300 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 304 325 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 397 419 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 470 489 IPR001554 GO:0000272|GO:0016161
Vium12818g00002 658 MobiDBLite consensus disorder prediction 56 70 - -
Vium12818g00002 658 Pfam BES1/BZR1 plant transcription factor, N-terminal 57 203 IPR008540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12818g00002 Vium-Chr12818 9078 15744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12818g00002 14 657 Glycoside Hydrolase AT5G45300 66.964 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vium12818g00002 Glyco_hydro_14 2.9e-87 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12818g00002 K01177 - gmx:100777004 1246.88