Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium127g00001 ATGGCGTCTCCGATTGAATTCGCGGACTACGAAGAAAACCTGATCGCGGCTCCGCAACTTATTGGAAACCCCGCAGACTATGGAATCACTGACGATGAAGAAACCGAAGGTGAAGACGAAGACGAAGATGACGAAGAGTACGTTCCCGGTGTGGCCACCCCTAGGGTTTCGCATGACACTCCTCCAAGCGTTTCATCCGATAACGTAATTGTTATCCCCGACGAAACACAGGATTGCGTGGGAGAGGAGAGGAATAAACGCCGTAGGTTCGAAAGAAGCGGGGCTTCTTGTTCCTTCGCGACTGGGAGCAGCAACGGTAGCCAAGAAAGCGACCATACCAACATTGATGGTCTTTTTTGCCCTATTTGCATGGATGTTTGGACCGATAACGGCGAACATCATATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAGATGGCTTCAACAACGCAAAAGTTCCAGCAAGTGTCCCCAATGTAATAGGAAATGTACGTTGAAGGATGTGAGGAAACTGTTTGCTTCCCGAGTAGTTGCGGTCGAGGAAGAATCTCAGAAGAGAATTCAGTCACTTGAGGCCAAATGTGCTGCCCTTGACAGTAAGGTCAGTGATTGGTGCAAGAAAGAAGAGGGATGGAAACTTCGAGAAGTCACCTTGCATTCTCAGGTTCAGACTCTTACACAGAGAAACACTTATTTGGAGCAGCTGCTACTAGATATGCGGAGCAGGGAATCTGCATCGATAAGTCACAATGGAAGCTCTCAGGGGAGATGCGAATCTGAGCACAACATTGGCCCAAAGTACTGTGGAAAGGGATCCATTTGTAATTTTGAATTGCAGGTATGCCATTATATCATTTCGCCCTCTCCTCTCCTACCTAACATCACCACTTTGGAAAAGTTTCACCTTGTTATCTTTTAG 936 0.469 MASPIEFADYEENLIAAPQLIGNPADYGITDDEETEGEDEDEDDEEYVPGVATPRVSHDTPPSVSSDNVIVIPDETQDCVGEERNKRRRFERSGASCSFATGSSNGSQESDHTNIDGLFCPICMDVWTDNGEHHICCLPCGHIYGMSCIKRWLQQRKSSSKCPQCNRKCTLKDVRKLFASRVVAVEEESQKRIQSLEAKCAALDSKVSDWCKKEEGWKLREVTLHSQVQTLTQRNTYLEQLLLDMRSRESASISHNGSSQGRCESEHNIGPKYCGKGSICNFELQVCHYIISPSPLLPNITTLEKFHLVIF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium127g00001 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 208 IPR013083 -
Vium127g00001 311 Coils Coil 186 206 - -
Vium127g00001 311 MobiDBLite consensus disorder prediction 16 77 - -
Vium127g00001 311 MobiDBLite consensus disorder prediction 29 47 - -
Vium127g00001 311 ProSiteProfiles Zinc finger RING-type profile. 120 166 IPR001841 -
Vium127g00001 311 SMART ring_2 120 165 IPR001841 -
Vium127g00001 311 MobiDBLite consensus disorder prediction 58 72 - -
Vium127g00001 311 Pfam Ring finger domain 120 166 IPR001841 -
Vium127g00001 311 CDD mRING-C3HGC3_RFWD3 116 178 - -
Vium127g00001 311 PANTHER RFWD3 PROTEIN 32 261 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Vium127g00001 311 SUPERFAMILY RING/U-box 113 172 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium127g00001 28 178 C3H Transcription Factor Family AT3G07200 26.257 9.04e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium127g00001 K15691 - gmx:100818898 275.018