Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12788g00001 ATGGCATCATCATCATCATCTTCATCTTCATCTTCTTCATTTTCCTTACTAATATCCCTTCTACTTATTCCCTTGCTATTTTCCTCTGTGGTCTTCTCTTACTCATTGAAAGATATTCAATCATGGTGCAACCAAACCCCTTACCCTCAACCTTGTGAGTACTACTTGACCAACCATGCCTTCAACAAACCTATCAAAAGCAAATCCGATTTTCTCAAAGTTTCCCTTCAACTTGCCCTAGAGAGAGCAGAAAGGGGTCAACTAAACACGCATTCCATAGGGCCAAAGTGCCGCAACGACCATGAAAAATCTGCATGGAACGATTGCATTCAACTCTACCAGTACACCATTCAAAGACTCAACAAAACTCTTGACCCCTACACCAAATGCACACAAACTGATACACAAACATGGCTCAGCACAGCCCTCACAAACCTCGAGACATGTAGAATCGGTTTCTATGAACTTGGTGTCACAGATTACATCCTACCCTTATTATCGACTAATGTCACAAAGTTGTTGAGCAACACCCTCTCTCTCAACAAGGACCCCAACAGCCAGTTCAAACCACCTAGTACCCAAGAGGGATTCCCTACATGGGTGAAACCAGGTGATAGAAAGTTGCTGCAATCATCTTCAGCAGCTTCTAAGGCTAATGTGATTGTAGCCAAAGATGGTTCTGGAAAGTACACAACAGTGAAAGCTGCTGTTGATGCCGCTCCAAGTAGCAGTGGAAGGTATGTGATATATGTGAAGAGTGGAGTATACAATGAACAAGTTGAGGTAAAATCAAAGAATATCATGTTGGTTGGAGATGGAATTGGAAAAACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCTCCACAACCTTCAATTCAGCCACTGTTGCTGCTGTGGGTGATGGATTCATTGCTCAAGACATCACATTCAGGAACACTGCAGGAGCAGCAAATCACCAAGCAGTGGCATTGCGTTCTGGTTCAGATCTTTCAGTATTTTATAGATGCAGTTTTGAAGGTTATCAAGACACATTATATGTTCATTCAGAGAGGCAATTCTACAGAGAATGTGACATCTATGGCACAGTGGATTTCATCTTTGGCAATGCTGCTGTGGTTTTGCAAAACTGCAACATCTATGCCAGAACCCCTCCTCAGAAAACCATCACAGTCACTGCTCAGGGTAGAACTGACCCTAACCAAAACACTGGAATCATCATCCACAACTCCAAGGTCACTGGTGCCTCGGGCTTCAACCCTAGTTCTGTCAAATCATACCTTGGCAGGCCCTGGAAGCAGTACTCAAGAACAGTGTTCATGAAGACCAATCTTGACAGTTTGATCAACCCTGCTGGATGGATGGAATGGGATGGTAACTTTGCTTTGGACACTTTGTATTATGCAGAATATGCAAACACTGGTCCTGGCTCCAGCACTGCCAATAGGGTCACTTGGAAGGGTTACCACGTTCTCACAACTGCATCTCAGGCCACACCTTTCACTGTCGGAAACTTCATTGCTGGCAACTCTTGGATACCTAACACCGGTGTTCCTTTTACCTCTGGACTTTAG 1575 0.44 MASSSSSSSSSSSFSLLISLLLIPLLFSSVVFSYSLKDIQSWCNQTPYPQPCEYYLTNHAFNKPIKSKSDFLKVSLQLALERAERGQLNTHSIGPKCRNDHEKSAWNDCIQLYQYTIQRLNKTLDPYTKCTQTDTQTWLSTALTNLETCRIGFYELGVTDYILPLLSTNVTKLLSNTLSLNKDPNSQFKPPSTQEGFPTWVKPGDRKLLQSSSAASKANVIVAKDGSGKYTTVKAAVDAAPSSSGRYVIYVKSGVYNEQVEVKSKNIMLVGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYARTPPQKTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWKQYSRTVFMKTNLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSSTANRVTWKGYHVLTTASQATPFTVGNFIAGNSWIPNTGVPFTSGL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12788g00001 524 CDD PMEI-like_3 41 182 - -
Vium12788g00001 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 182 IPR035513 -
Vium12788g00001 524 Gene3D - 213 524 IPR012334 -
Vium12788g00001 524 ProSitePatterns Pectinesterase signature 1. 243 262 IPR018040 -
Vium12788g00001 524 FunFam Pectinesterase 213 524 - -
Vium12788g00001 524 SMART PMEI_2 34 180 IPR006501 GO:0004857
Vium12788g00001 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 183 IPR035513 -
Vium12788g00001 524 Pfam Pectinesterase 219 510 IPR000070 GO:0030599|GO:0042545
Vium12788g00001 524 PANTHER PECTINESTERASE 25 514 - -
Vium12788g00001 524 NCBIfam pectinesterase inhibitor domain 16 182 IPR006501 GO:0004857
Vium12788g00001 524 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Vium12788g00001 524 Pfam Plant invertase/pectin methylesterase inhibitor 38 180 IPR006501 GO:0004857
Vium12788g00001 524 SUPERFAMILY Pectin lyase-like 213 523 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12788g00001 Vium-Chr12788 7659 11830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12788g00001 17 524 Carbohydrate Esterase AT2G45220 67.451 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12788g00001 K01051 - gmx:100794948 915.99