Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12787g00001 ATGCTCTACGGGCTTCTCCCTTTGTTGGGAATGTTGGCTTTTCTTGGAATGCAGCTTCCTGTCATAATGGCTGATTGCCCTTTGAATTTTACTGGTTCAAACTTCACACTTGCATCCTCTCTATGCTCTAACCATGGTGACAGAGGAAAATGCTGCCGATACATCAATACTAATGTTGCAATTGCTGTTTCTCGTTTTGCTAATGCAACAGGCAACCTAGGGGTCTCTCAAAATGCGACTGACATCTGCCTCCAAACCATATTTCAAACCTTGCAACTTAATGGAGTTGCACAAAATGCAACAGCTTTCTGTGGTTTCGGAACAAAAATTCCTGTTAATTATGAATGTAAGGGGAGAACTAGTGTTGTCCAAATGTTGCAATCCCCCAGATTTACGGAGGTCACAAAAAATTGCAAAGCGCCACTTGGAGAGGAAAGTAAATGTAAGAAGTGTTTAAATGCTGGCATTGGTTATCTGCATCATATCGGAATTGAAGATAATATAACACTTAGTACATGTCGTGATGCCACTTTTGCTGCATTAGCAAGCCAAGTTGATGAGATATCTACCATTGACATTGCAATTTGTTTCTTTGGGGTTCAAGGACTTCTCAAGCTTCCTGTTTTAGAGTCAACCCCATCCTTGCCTGCTCCTAAGGCTTCTCCAAGCCCACCTGTTTCTGATGGCCCAAGTCAACCATTGTTAAGTGCACCTTTAAAGGGAAAGCATCATTCATATCGTTTGACGTTAGTTCCAGGTATTGCTATTGCAGTTACAGCTGTTGCTGTTATCACACTCATAGTCTTGATAGTTCTAATTCGCCAGAAAAGCAGAGAGCTAGACAAGCCTGATAATTTTGGTAAACCCTGTTCGAAAACCTTACCTCCTTGTACAACATGGAAATTTCAGGAAGGTTCTTCATCTATGTTCCGAAAATTCAGCTACAAGGAGATAAAAAGGGCTACAGAGGATTTTAGTACTATCATTGGTCAAGGGGGATTTGGAACTGTGTATAAAGCTGATTTTTCTGATGGCCTGGTCGCAGCAGTAAAACGGATGAACAGAATATCTGAGCAGGGAGAGGATGAGTTCTGCAGAGAAATTGAGCTTCTTGCCCGGCTGCACCATCGGCATCTTGTTTCCTTGAGAGGCTTTTGCATTCAAAAACGTGAGAGGTTTCTATTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATTCCCCTGGTAAAACACCTTTAAGTTGGCGAACAAGAATCCAAATTGCCATTGATGTGGCCAATGCCCTGGAGTACCTCCATTTCTATTGCGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTTGTTGCCAAGATAGCTGATTTTGGTCTTGCACAAGCTTCAAAAGATGGATCGGTATGCTTTGAACCTGTAAACACTGAAATTCGGGGAACTCCGGGTTATATGGATCCTGAGTATGTTGTTACTCAAGAGCTCACCGAGAAAAGTGACATATACAGTTTTGGGGTATTACTACTTGAAATTGTAACAGGAAGACGAGCCATTCAAGATAATAAGAATCTAGTAGAATGGGCCCAACCATACATGGAATCAGATACGAGATTATTGGAGCTAGTAGATCCCAATGTGAGGGAATCTTTTGACTTGGATCAGCTCCAAACAGTAATATCTATAGTAGCATGGTGCACCCATAGAGAAGGAAGGGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAAACATCAGAACCAATGCACAGTGAGTTTCTACAAACTGTTGAAGATGAAGAATGTCATGGAAGTCAGCACAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAATGAAGCATTGTTTCACAGCGGAGAGGGAAGATATCTTGCTTCATCTTCGAGTACATCCCGGTCATATTGCAGTAGAAGTTTTTTACTTGAGACTGGCTCTCCACAGTCTCCGCCAAATATGTTCTCTGTGTGA 2016 0.4187 MLYGLLPLLGMLAFLGMQLPVIMADCPLNFTGSNFTLASSLCSNHGDRGKCCRYINTNVAIAVSRFANATGNLGVSQNATDICLQTIFQTLQLNGVAQNATAFCGFGTKIPVNYECKGRTSVVQMLQSPRFTEVTKNCKAPLGEESKCKKCLNAGIGYLHHIGIEDNITLSTCRDATFAALASQVDEISTIDIAICFFGVQGLLKLPVLESTPSLPAPKASPSPPVSDGPSQPLLSAPLKGKHHSYRLTLVPGIAIAVTAVAVITLIVLIVLIRQKSRELDKPDNFGKPCSKTLPPCTTWKFQEGSSSMFRKFSYKEIKRATEDFSTIIGQGGFGTVYKADFSDGLVAAVKRMNRISEQGEDEFCREIELLARLHHRHLVSLRGFCIQKRERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSVCFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESDTRLLELVDPNVRESFDLDQLQTVISIVAWCTHREGRARPSIKQVLRLLYETSEPMHSEFLQTVEDEECHGSQHRGRRSKGKMLRNEALFHSGEGRYLASSSSTSRSYCSRSFLLETGSPQSPPNMFSV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12787g00001 671 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12787g00001 671 Gene3D Phosphorylase Kinase; domain 1 297 398 - -
Vium12787g00001 671 SUPERFAMILY Protein kinase-like (PK-like) 304 594 IPR011009 -
Vium12787g00001 671 FunFam Putative receptor-like protein kinase 291 398 - -
Vium12787g00001 671 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Vium12787g00001 671 Pfam SPARK 25 162 IPR043891 -
Vium12787g00001 671 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12787g00001 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vium12787g00001 671 FunFam Putative receptor-like protein kinase 399 599 - -
Vium12787g00001 671 MobiDBLite consensus disorder prediction 217 231 - -
Vium12787g00001 671 CDD STKc_IRAK 329 591 - -
Vium12787g00001 671 SMART serkin_6 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12787g00001 671 Gene3D Transferase(Phosphotransferase) domain 1 399 615 - -
Vium12787g00001 671 MobiDBLite consensus disorder prediction 215 234 - -
Vium12787g00001 671 PANTHER OS01G0750732 PROTEIN 168 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12787g00001 Vium-Chr12787 128 6278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12787g00001 24 670 Receptor kinase-like Gene Family AT3G19300 59.447 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vium12787g00001 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12787g00001 - - gmx:100807955 1225.31