Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1276g00003 ATGCCCATGTTGTACTACGGTCTTGTGGTGGTGGGAACCGCCGCCATAGTGCTGGCCGTGTACAACGTCTTCCTCCTGAAACGCAGCCACTCGCGGTCGCAGCCTCCGGGGTCGAGTCCCAATGGTGTGGGAACAACAATTGAAGGGGTTTCGGAGATAACGAGGAGCTTGGAGAACCGACAGAGACAGTTGCTGTCGAGCTTCAAGTACAAGAGAGAAGAGGTGGCAAAAGAAAAAGAAGAGTTGGAAGATTTTGAGTGCCCCGTTTGCTTATCGGTTTACGAGGAAGGAGAAGAAGTGAGGAAGCTTCCACAGTGCAAACACTATTTCCACGTTCTTTGCATAGACATGTGGCTCTATTCTCACTTCGATTGCCCCATTTGTAGAACACCCGTTGTCGTCGGCCACCTCTCTCCGATCGATGCCTTCATTGAATCCGGCGGCATCTCGTAG 453 0.5188 MPMLYYGLVVVGTAAIVLAVYNVFLLKRSHSRSQPPGSSPNGVGTTIEGVSEITRSLENRQRQLLSSFKYKREEVAKEKEELEDFECPVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHFDCPICRTPVVVGHLSPIDAFIESGGIS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1276g00003 150 CDD RING-H2_EL5-like 86 129 - -
Vium1276g00003 150 Pfam Ring finger domain 86 129 IPR001841 -
Vium1276g00003 150 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Vium1276g00003 150 SUPERFAMILY RING/U-box 77 134 - -
Vium1276g00003 150 SMART ring_2 87 128 IPR001841 -
Vium1276g00003 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 135 IPR013083 -
Vium1276g00003 150 FunFam RING-H2 finger protein ATL1 45 134 - -
Vium1276g00003 150 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 133 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1276g00003 Vium-Chr1276 32010 32925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1276g00003 1 132 C3H Transcription Factor Family AT1G04360 29.932 1.02e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1276g00003 - - gmx:102668279 197.978