Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1276g00001 ATGCTCACGTGCATAGCACGTTCCAAGAAACTCGACTCGGCGAGCGACGATCCGAGTTCGCGGGGCGCCAAATCGCTAACGTGTCAGCTGAAGGAGATGGCACTGAAGGCTTCGGGATCGTACAAGCAGTGCGGTCCGTGCGCGCTGCCGCAGAGTCGACTGAGTCGCGGTGGCGAGTCCGATTCGGAGTCGTCGCGGCGGCGGTGGGGGAAGGAGATGGAGGCTCGGTTGAAGGGGATTTCGAGCGGCGAGGGGACGCCGAGCTCCAGCGGGAGGAGAATGGTGGTGGTGCTGGAAGAGGAGGCGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCACGTTCGTATCGCTTCCGCGTGGCGGGAACCATCTCAAACGGATTCGGTTCAGTCGCGATATATTTAACAAATGGCAAGCTCAGAGGTGGTGGGCAGAGAATTACGACAAGGTGATGGAACTTTACAATGTTCAAAGGCTTAACCGGCAAGCTATCCCTCTTCCAACTCCACCAAGGTCTGAAGACGAGAGCTCGAAGCGTGAATCAATAGAAGAGATCCCTGTGACACCTCCGCTGAGCAGGGAAAGGCCACCGTGTAATATATTCCGTGGAGGAGGAGGAGGGGTGGCAATGGGGTACTCATCCTCTGATTCGTTCGATCAGCATTCAATGCAATCCCGGCATTACTATGATCCGAGTGGTGTGAACTCAACCCCGAAGGTGTCGACCATTAGTGCTGCTGCGAAGACAGATATCTCATCATCAATGGATGCCGATGCTTCTATCAGAAGTAGCTCATCTAGGGAAGCTGATCGCTCCGGCGATTTATCAATCAGTAATGCCAGTGACCTCGATGCTGAATGGGTCGAGCAGGATGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCTGGTGGCAAAAGGGAGCTCAGACGAGTAAGGTTCAGTCGAGAAAAGTTTGGGGAGGTGTATGCTAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACAGTACTTGTGA 1038 0.5472 MLTCIARSKKLDSASDDPSSRGAKSLTCQLKEMALKASGSYKQCGPCALPQSRLSRGGESDSESSRRRWGKEMEARLKGISSGEGTPSSSGRRMVVVLEEEAEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRLNRQAIPLPTPPRSEDESSKRESIEEIPVTPPLSRERPPCNIFRGGGGGVAMGYSSSDSFDQHSMQSRHYYDPSGVNSTPKVSTISAAAKTDISSSMDADASIRSSSSREADRSGDLSISNASDLDAEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEVYARLWWEENRARIHEQYL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1276g00001 345 MobiDBLite consensus disorder prediction 219 243 - -
Vium1276g00001 345 MobiDBLite consensus disorder prediction 59 78 - -
Vium1276g00001 345 Pfam Transcription factor regulating root and shoot growth via Pin3 105 159 IPR013591 -
Vium1276g00001 345 Pfam Transcription factor regulating root and shoot growth via Pin3 290 344 IPR013591 -
Vium1276g00001 345 ProSiteProfiles BRX domain profile. 105 160 IPR013591 -
Vium1276g00001 345 MobiDBLite consensus disorder prediction 170 203 - -
Vium1276g00001 345 Pfam Transcription factor BRX N-terminal domain 24 47 IPR027988 -
Vium1276g00001 345 MobiDBLite consensus disorder prediction 41 91 - -
Vium1276g00001 345 ProSiteProfiles BRX domain profile. 290 345 IPR013591 -
Vium1276g00001 345 MobiDBLite consensus disorder prediction 257 282 - -
Vium1276g00001 345 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 345 IPR044532 -
Vium1276g00001 345 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1276g00001 Vium-Chr1276 4049 13492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1276g00001 1 345 Major Intrinsic Protein MIP AT1G31880 42.636 5.23e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1276g00001 - - pvu:PHAVU_009G229100g 613.994