Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12764g00016 ATGGCAACCCGCAGATATGTTTTTGGAAGGGCTGATGAGGCCACTCATCCTGACTCCATGAGGGCCACTTTGGCTGAATTTGCCTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGTTAAGATTTACCAGGATTCAGCTTTCTCAGCTGGTGAACTGTTAGCACTTGCACTTGCCCATGCATTTGCTCTATTTGCTGCTGTATCTGCTAGCATGCATGTATCAGGTGGCCATGTCAACCCAGCTGTGACATTCGGTGCTCTCGTTGGGGGGAGGATCTCTGTTGTTCGTGCAGTATACTACTGGGTTGCTCAACTTCTGGGTTCTATTGTGGCTGCTCTTGTGCTCAGGCTTGTCACTAATAACATGAGACCATCAGGGTTCCACATAGCACCAGGTGTTGGAGTAGGACACATGTTTATACTTGAGATTGTGATGACATTTGGGCTGATGTATACTGTATATGCTACTGCAATAGATCCCAAAAGGGGCGCTGTTAGCAATATCGCACCCTTGGCAATTGGGCTCATTGTTGGAGCAAACATCCTTGTTGGTGGGCCATTTGATGGAGCATGCATGAACCCTGCTCTGGCTTTTGGACCTTCCCTAGTGGGCTGGAGATGGCACCAGCACTGGATCTTCTGGGTGGGTCCATTGATTGGGGCAGCACTGGCAGCACTGGTGTATGAATATGCTGTGATCCCAATTGAACCTCCCCCACACCACCACCAGCCCTTGCCTTCTGAAGATTACTAA 771 0.4942 MATRRYVFGRADEATHPDSMRATLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVTFGALVGGRISVVRAVYYWVAQLLGSIVAALVLRLVTNNMRPSGFHIAPGVGVGHMFILEIVMTFGLMYTVYATAIDPKRGAVSNIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHQHWIFWVGPLIGAALAALVYEYAVIPIEPPPHHHQPLPSEDY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12764g00016 256 FunFam Probable aquaporin TIP1-1 4 254 - -
Vium12764g00016 256 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 PANTHER AQUAPORIN-8 7 246 IPR034294 -
Vium12764g00016 256 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vium12764g00016 256 SUPERFAMILY Aquaporin-like 13 249 IPR023271 -
Vium12764g00016 256 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12764g00016 256 Gene3D Glycerol uptake facilitator protein. 4 242 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12764g00016 Vium-Chr12764 87183 88941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12764g00016 2 256 Major Intrinsic Protein MIP AT1G73190 70.455 1.29e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12764g00016 K09873 - gmx:100817450 454.136