Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12764g00015 ATGAGCTTGGCCTTTACCATAAGCTTTTTATATGTGGTCTTGTTTGTGTCATTCAAATCCAACATGGTGTTGTGCGTTGAAATTGGGGAATTCTTTCCAGAAGAAAGAGATGCTTTGATACTCATAAGGGATTCTTTGAATTCATCTGTGAATTTGCATGGGAATTGGACAGGCCCTCCTTGTATAGACAGTCTGAGTAGGTGGATTGGAATCACTTGCTCAAATTGGCATGTTGTTCAAATTGTTCTTGAAGGAGTTAACCTTAGTGGTTATCTACCTCCCACATTTCTTCAAAACATAACTCTCTTGAGCCAACTTGACTTCAGAAATAATGCACTTTTTGGACCATTGCCAAGCCTCAAGAATTTGGTGTTTTTGGAACATGCCCTTTTATCATTCAATCATTTCTCAGGGTCAATTCCTGTGGAATATGTTGAACTTACCAGTCTGAGAGTGTTGGAGCTGCAAGAGAATTACTTACATGGTCAAATTCCACCCTTTGATCAACCATCATTGACAAGTTTCAATGTGTCATATAATCATCTGTCAGGGCCTATTCCTGAAACTTCTGTGCTGATGAGGTTCCCAGAGAGTTCTTATGAAAATAATTCAGATCTTTGTGGAGAGCCTTTGGATAAGTTATGTCCTATTCAACCTCCTGCCCCATCTCCAGCACCATTTTCTGCACCACCTCCTTTTGCTATGCCTCCAATTCCAGCAGTGAAGCCAAATAACAGGTTTCAAGCATGGACTGTTGCTGTGATTGGTGCTGCAGCTGCACTGATTCTTCTTTCTCTGATCATTTTTATTGCTTTCTTGTTTCGTAAAAGACAAACAAGTGGAAAAGAAGTAAGAAGAGATGATTCAGCTGGGCATGTTTTTGGGGCATGGGCAAAGAAGATGGTGGCTTCTGCTGGGGGCAGTGATGTTTCTGAGAGATTAGGCAGATTGGAATTTTCTAACAAGAAACTACCAGTTTTTGACTTGGATGATTTACTAAGGGCATCAGCAGAAATTCTAGGAAGAGGGAACTTAGGTATTACGTACAAAGCAACACTTGAAACTGGAACTGTTGTTGCAGTGAAGAGACTTAACCACATGAATGAACTGAGCAAGAAGGAATTTCTCCAGCAGATCCAATTGCTAGGACAGATGAAGCATGAAAATATAGCAGAAATAATCTCCTTTTATTATTCAGAGGAGCAAAAGTTGGTCATATATGAATTTACCTCTGATGGCACTTTGTTTGAACTACTACATGAGGGTAGAGGAATTGGAAGAATGCCACTTGATTGGACCACAAGACTTTCTATCATCAAAGACATAGCAAAGGGTCTTCTTTTCCTTCATCATTCCTTGCCTTCTCAAAAGGTTCCTCATGCCAACCTCAAGTCATCCAATGTCCTAATCCATCAAGATAGTAAAGGGTACCATTCCAAGCTCACGGACTATGGTTTCTTGCCTCTACTCCCAGCCAAACAGAATGCAGAAAAACTAGCCATAAGGAGGTCACCAGAATTTGTTCAAGGGAAGAAGGTAACACGCAGTGCTGATGTTTATTGCTTTGGCATCATTGTGCTAGAGATTGTAACCGGCAAAATCCCTGGCCATATCATAGGTGAAATTGAAGAAACTACCAATGATCTTTCAGATTGGGTAAGAACTGTGGTGAACAATGATTGGTCCACAGATATATTGGATTTAGAAATACTTGCAGAAAAAGAAGGCCATGATGAAATGTTAAAGCTAACAGAGTTAGCTCTAGAGTGTACTGATATGACACCAGAGAAGAGACCTAAAATGAGTGTAGTGTTGATGAGAATAGAAGAGATAGAGAAAATGAAAAAGGAGAGTGACTAA 1860 0.4005 MSLAFTISFLYVVLFVSFKSNMVLCVEIGEFFPEERDALILIRDSLNSSVNLHGNWTGPPCIDSLSRWIGITCSNWHVVQIVLEGVNLSGYLPPTFLQNITLLSQLDFRNNALFGPLPSLKNLVFLEHALLSFNHFSGSIPVEYVELTSLRVLELQENYLHGQIPPFDQPSLTSFNVSYNHLSGPIPETSVLMRFPESSYENNSDLCGEPLDKLCPIQPPAPSPAPFSAPPPFAMPPIPAVKPNNRFQAWTVAVIGAAAALILLSLIIFIAFLFRKRQTSGKEVRRDDSAGHVFGAWAKKMVASAGGSDVSERLGRLEFSNKKLPVFDLDDLLRASAEILGRGNLGITYKATLETGTVVAVKRLNHMNELSKKEFLQQIQLLGQMKHENIAEIISFYYSEEQKLVIYEFTSDGTLFELLHEGRGIGRMPLDWTTRLSIIKDIAKGLLFLHHSLPSQKVPHANLKSSNVLIHQDSKGYHSKLTDYGFLPLLPAKQNAEKLAIRRSPEFVQGKKVTRSADVYCFGIIVLEIVTGKIPGHIIGEIEETTNDLSDWVRTVVNNDWSTDILDLEILAEKEGHDEMLKLTELALECTDMTPEKRPKMSVVLMRIEEIEKMKKESD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12764g00015 619 Pfam Protein kinase domain 337 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12764g00015 619 Gene3D Ribonuclease Inhibitor 32 217 IPR032675 -
Vium12764g00015 619 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Vium12764g00015 619 FunFam Leucine-rich repeat receptor-like protein kinase 125 217 - -
Vium12764g00015 619 SUPERFAMILY Protein kinase-like (PK-like) 338 608 IPR011009 -
Vium12764g00015 619 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 617 IPR046959 -
Vium12764g00015 619 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vium12764g00015 619 ProSiteProfiles Protein kinase domain profile. 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12764g00015 619 SUPERFAMILY L domain-like 33 196 - -
Vium12764g00015 619 Gene3D Phosphorylase Kinase; domain 1 304 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12764g00015 Vium-Chr12764 83038 85415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12764g00015 55 618 Receptor kinase-like Gene Family AT1G68400 34.150 3.91e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium12764g00015 Pkinase 3.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12764g00015 - - gmx:102668068 999.193