Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12764g00009 ATGACTATATCAGTTCAATCATGTATACACTTTTCATGTCACATTTTTCTGGTTTTGTTCTTCTTCCTTGTTCACACAAGCTCCCAATCTTTGAATGATCAAGAGCATGCAGTTTTGCTTAACATAAAGCAATATCTTGAAGACCCTTCTTTCCTCTCCCATTGGAATTCAACTTCCTCTCACTGTTCATGGCCAGAGATCACATGCACCACTGGCTCAGTCACTTCCCTCACCCTCTCCCATTCCAACATCAACAAAACTATACCATCCTTCATATGTGACCTCACCAACCTCACACACCTTGACTTCAGCTTCAACCTCATCCCTGGTGACTTCCCCACACCCCTCTACAACTGCTCCAAGTTGGAGTACCTAGATCTTTCAGGGAACAACTTTGATGGCCAGGTTCCTCGTGAGATTGACCGTTTGGGTGCTAATTTGCAATATCTCAACCTTGGTTCTACCAATTTCCATGGTGATGTTCCTGCCAGTATTGGAAATTTGAAGCAACTGAGACAGCTTAAACTTCAGTTTTGCTTATTGAATGGCACTGTTGCTGCTGAGATTGATAGCTTGCCCAATCTTGAGTACTTGGATTTGTCCTCTAACTTTTTGTTTCCTAAATGGAAGTTGCCTTGGAACTTGACCAAGTTCAACAAACTGAAGGTGTTTTATTTGTATGGCACCAACTTGGTTGGGGAAATCCCAGATAACATTGGAGATATGGTGGCTTTGGAGAAGCTGGATGCATCAAAAAATAACTTAACTGGAGGAATTCCAAGTGGTTTATTCTTGCTGAAGAATCTGACCTCACTCTATCTTTTTCAAAACAGCCTCTCAGGGGAGATACCAAGTGTGGTTGATGCATTAAACTTGGTCAACCTTGATCTTGCAACGAATGATCTCACAGGGAAAATACCAGATGATTTTGGAAAACTGCAACAGCTGGAATGGTTGAGTTTGTCTTTGAATAACTTGTCAGGTGTGATACCACAAAGCTTGGGCAGTCTTCCTGCTCTCATTGATTTTCGCGTGTTTTTCAACAAGTTATCAGGTACTCTTCCTCCTGATTTTGGCCGTTACTCAAAGCTTAAAACCTTTTTGATTGCATCTAATAATTTTACGGGGAAGTTACCGGATAACCTGTGCTATCATGGGATGTTACTTAACTTGTCTGTTTATGAGAATAAGCTGAGTGGTGAGTTGCCAGAATTTCTTGGAAATTGCAGTAGTTTGCTGGACCTGAAAATTCACGAAAATGAGTTTTCTGGTAACATTCCTAATGGTCTTTGGACATCTTTCAATTTGTCAAATTTCATGGTTAGCCATAACAAGTTCACTGGTGAGCTTCCTAAAAGGCTATCTTGGAATGTTTCGAGGTTTGAGATAAGTTACAATCAGTTTTCTGGTGGAATTCCTAGTGGAGTATCATCATGGACTAATTTGGTAGTGTTTGATGCCAGTAAGAACAATTTCAATGGAAGTATTCCAAAAGAGCTAACAGCTCTTCCTAAGTTAATAACCTTGTTGCTTGATCAGAACCAACTCACTGGGGCACTTCCATCAGATATAATATCATGGAAATCCTTGGTAACTCTAAATTTGAGCCAAAACCAACTCTCTGGACAAATCCCTCATGCAATTGCTCAGTTACCTGTCCTTAGTCAGCTTGATCTATCAGAAAATGAATTCTCTGGCCAAGTTCCTTCTCTATCTACCAGAGTCACCAATCTCAATTTGTCTTATAATCATTTAACTGGGAGAATTCAAAGGGAGTTTGAAAATTCTGCGTATGCTGGTAGCTTTTTGGGCAATTCTGGTCTTTGTTCTGACAACCCAGCACTGAACCTTACCTTGTGCAATTCTGGCCTTCAAAGAACAAGCAAGGACTCATCTTGGTCTATTGGTTTGATTATATGCTTGGCGGTAGCAGCCTTGTTACTGGCCCTTTTAGCATCACTCTTGTTTATTAGATTTCAAAGAAAGAGAAAGAAAGGATTAGATAACTCTTGGAAGCTCGTTTCCTTTCAGAGGGTGAATTTCACAGAATCAACCATTGTCTCATCAATGACAGACCAAAACATTATTGGTAGTGGTGGATATGGTACAGTATATCGCATTGATGTTGGTTCAGACTATGTTGCTGTGAAAAAGATTTGGAATAACAGAAAGTTAGACAAGAAGCTTGAGAGCTCCTTCCGTGCAGAAGTTAGAATATTGAGCAACATTCGTCATACCAACATTGTGAGGTTGATGTGTTGTATCTCTAATGAAGATTCTATGCTCCTTGTATATGAGTATCTGGAAAATCTCAGCCTAGATAAGTGGCTGCATAAGAGTGTTAAACCAGGTTCAGCCAATAAAGTGGTCCTTGATTGGCCAAAGAGGTTGAAAATAGCAATAGGGGTTGCTCAGGGTTTGAGCTACATGCATCATGACTGTTTACCACCTGTTGTTCATAGAGATATAAAAACAAGCAACATCCTTCTGGATTCTCAGTTCAATGCTAAAGTTGCTGATTTTGGACTAGCTAAGTTGTTAATCAAGCCAGAGGAACTAAGCAGCATGTCAGCTGTTATTGGCTCATTTGGCTATATTGCTCCAGAATTTGTGCAATCAACCAGAGTTAATGAAAAGATTGACGTGTTCAGCTTTGGAGTAGTGCTATTAGAACTGACAACCGGTAAAGAAGCAAGTTATGGAGACCAACATTCATCTCTTTCAGAGTGGGCGTGGCGTCACATTCTGATTGGAGGCAATGTTGAAGAATTGCTAGACAAAAATGTCACTGAAGCCAGTTACTTAAATGAAATGTGCACTGTTTTCAAACTTGGTGTCATGTGCACTGCAACACTGCCTACCAGTAGGCCTTCCATGAAGGATGCCCTACAAATATTGCAAAGCTTAGCAGAACCATTATTTTATGCAGAGAAGTGCTTTGACCACTACTATGATGCTAGGCCCCTTCTTAAGAGTTCAAAGGAAGCTATATTGAATGTTGATCATGATAGTGAATGA 3018 0.4026 MTISVQSCIHFSCHIFLVLFFFLVHTSSQSLNDQEHAVLLNIKQYLEDPSFLSHWNSTSSHCSWPEITCTTGSVTSLTLSHSNINKTIPSFICDLTNLTHLDFSFNLIPGDFPTPLYNCSKLEYLDLSGNNFDGQVPREIDRLGANLQYLNLGSTNFHGDVPASIGNLKQLRQLKLQFCLLNGTVAAEIDSLPNLEYLDLSSNFLFPKWKLPWNLTKFNKLKVFYLYGTNLVGEIPDNIGDMVALEKLDASKNNLTGGIPSGLFLLKNLTSLYLFQNSLSGEIPSVVDALNLVNLDLATNDLTGKIPDDFGKLQQLEWLSLSLNNLSGVIPQSLGSLPALIDFRVFFNKLSGTLPPDFGRYSKLKTFLIASNNFTGKLPDNLCYHGMLLNLSVYENKLSGELPEFLGNCSSLLDLKIHENEFSGNIPNGLWTSFNLSNFMVSHNKFTGELPKRLSWNVSRFEISYNQFSGGIPSGVSSWTNLVVFDASKNNFNGSIPKELTALPKLITLLLDQNQLTGALPSDIISWKSLVTLNLSQNQLSGQIPHAIAQLPVLSQLDLSENEFSGQVPSLSTRVTNLNLSYNHLTGRIQREFENSAYAGSFLGNSGLCSDNPALNLTLCNSGLQRTSKDSSWSIGLIICLAVAALLLALLASLLFIRFQRKRKKGLDNSWKLVSFQRVNFTESTIVSSMTDQNIIGSGGYGTVYRIDVGSDYVAVKKIWNNRKLDKKLESSFRAEVRILSNIRHTNIVRLMCCISNEDSMLLVYEYLENLSLDKWLHKSVKPGSANKVVLDWPKRLKIAIGVAQGLSYMHHDCLPPVVHRDIKTSNILLDSQFNAKVADFGLAKLLIKPEELSSMSAVIGSFGYIAPEFVQSTRVNEKIDVFSFGVVLLELTTGKEASYGDQHSSLSEWAWRHILIGGNVEELLDKNVTEASYLNEMCTVFKLGVMCTATLPTSRPSMKDALQILQSLAEPLFYAEKCFDHYYDARPLLKSSKEAILNVDHDSE 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12764g00009 1005 Gene3D Transferase(Phosphotransferase) domain 1 768 979 - -
Vium12764g00009 1005 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 391 969 - -
Vium12764g00009 1005 Gene3D Ribonuclease Inhibitor 33 145 IPR032675 -
Vium12764g00009 1005 Pfam Protein kinase domain 692 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12764g00009 1005 ProSitePatterns Protein kinases ATP-binding region signature. 696 718 IPR017441 GO:0005524
Vium12764g00009 1005 FunFam Receptor-like protein kinase HSL1 isoform A 32 183 - -
Vium12764g00009 1005 SUPERFAMILY Protein kinase-like (PK-like) 681 966 IPR011009 -
Vium12764g00009 1005 FunFam Receptor-like protein kinase HSL1 670 767 - -
Vium12764g00009 1005 SMART LRR_sd22_2 266 292 - -
Vium12764g00009 1005 SMART LRR_sd22_2 95 127 - -
Vium12764g00009 1005 SMART LRR_sd22_2 192 217 - -
Vium12764g00009 1005 Gene3D Ribonuclease Inhibitor 352 619 IPR032675 -
Vium12764g00009 1005 FunFam Kinase family with leucine-rich repeat domain-containing protein 768 983 - -
Vium12764g00009 1005 SMART LRR_typ_2 95 119 IPR003591 -
Vium12764g00009 1005 SMART LRR_typ_2 192 218 IPR003591 -
Vium12764g00009 1005 SMART LRR_typ_2 313 336 IPR003591 -
Vium12764g00009 1005 SMART LRR_typ_2 242 266 IPR003591 -
Vium12764g00009 1005 SMART LRR_typ_2 503 527 IPR003591 -
Vium12764g00009 1005 SMART serkin_6 690 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12764g00009 1005 CDD STKc_IRAK 696 969 - -
Vium12764g00009 1005 SUPERFAMILY L domain-like 46 378 - -
Vium12764g00009 1005 FunFam Receptor-like protein kinase HSL1 isoform A 296 620 - -
Vium12764g00009 1005 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 188 288 - -
Vium12764g00009 1005 Gene3D Ribonuclease Inhibitor 210 351 IPR032675 -
Vium12764g00009 1005 SUPERFAMILY RNI-like 288 588 - -
Vium12764g00009 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vium12764g00009 1005 Gene3D Ribonuclease Inhibitor 146 209 IPR032675 -
Vium12764g00009 1005 Pfam Leucine rich repeat 74 132 IPR001611 GO:0005515
Vium12764g00009 1005 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Vium12764g00009 1005 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vium12764g00009 1005 Gene3D Phosphorylase Kinase; domain 1 670 767 - -
Vium12764g00009 1005 ProSiteProfiles Protein kinase domain profile. 690 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12764g00009 Vium-Chr12764 39179 42947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12764g00009 31 992 Receptor kinase-like Gene Family AT5G25930 51.031 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium12764g00009 Pkinase 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12764g00009 - - gmx:100789972 1650.18