Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12764g00007 ATGGCACCCTCAACCTCTCAAGTCCTCACCTGCAAAGCTGCTGTGGCATGGGGAGCTGGGGAGCCACTGGTGATGGAGGAAGTGGAGGTGAGCCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGCCGTAGTGATCTCTCTGCTTGGGAATCTCATGCCATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGTGGGACTAGGAGTGACTGAATTCAAAGAGGGTGACCATGTGCTAACAGTATTCATTGGAGAATGCATGACATGCAGACAGTGTACATCTGGAAAAAGTAACGTTTGTCAAGTTTTAGGATTGGAAAGAAGGGGTTTAATGCACAGTGATCAGAAGACACGCTTCTCAATAAAAGGGAAGCCTGTTTATCATTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAATCCATTCCGGATGTGCAGTGAAAGTCAGCCCTCATGCACCTCTTGAGAAAATTTGTCTTCTGAGCTGTGGGGTTGCTGCAGGTCTGGGTGCAGCATGGAATGTTGCGGATGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTAGGCCTATCCGTTGCTCAAGCTGCAAAACTAAGAGGTGCATCTAGAATAATTGGTGTTGACAACAACCCACAGAAGTGTGAAAATGCTAAGGCTTTTGGGGTTACAGAAGTTGTTGACCCGAATTCCTGTGAAGAACCTATTGCTCAGGTTATTAAGCGGATTACTGACGGCGGAGCAGATTTCTCTTTTGAATGTGTTGGTGATACTGATATGATAACCACTGCATTGCAGTCATGCTGTGACGGGTGGGGTTTGACTGTAACACTTGGGGTGCCAAAGGCGAAGCCTGAGATGTCAGCTCATTATGGACTACTACTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCAAAATCTGATCTTCCTTCGTTAGTAGAGAAGTATGTCAACAAGGAAATCAAGATTGATGACTACATAACACACAATTTGCCATTTGATGACATCAACAAAGCTTTCAATCTCATGAAGGAAGGAAAGTGTCTGCGTTGTGTTATCCACATGCAAAGATAA 1131 0.4447 MAPSTSQVLTCKAAVAWGAGEPLVMEEVEVSPPQPMEIRIKVVSTSLCRSDLSAWESHAIFPRIFGHEASGIVESVGLGVTEFKEGDHVLTVFIGECMTCRQCTSGKSNVCQVLGLERRGLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVIHSGCAVKVSPHAPLEKICLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQAAKLRGASRIIGVDNNPQKCENAKAFGVTEVVDPNSCEEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKAKPEMSAHYGLLLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIKIDDYITHNLPFDDINKAFNLMKEGKCLRCVIHMQR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12764g00007 376 SUPERFAMILY GroES-like 5 184 IPR011032 -
Vium12764g00007 376 FunFam Alcohol dehydrogenase 6 14 195 - -
Vium12764g00007 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Vium12764g00007 376 Gene3D - 14 369 - -
Vium12764g00007 376 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Vium12764g00007 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 338 IPR036291 -
Vium12764g00007 376 Pfam Alcohol dehydrogenase GroES-like domain 36 156 IPR013154 -
Vium12764g00007 376 CDD alcohol_DH_plants 9 373 - -
Vium12764g00007 376 SUPERFAMILY GroES-like 325 373 IPR011032 -
Vium12764g00007 376 Pfam Zinc-binding dehydrogenase 203 326 IPR013149 -
Vium12764g00007 376 Gene3D - 179 317 - -
Vium12764g00007 376 PANTHER ALCOHOL DEHYDROGENASE 7 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12764g00007 Vium-Chr12764 24416 30476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12764g00007 37 111 Monolignol Biosynthesis Gene Families AT2G21730 39.241 4.63e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12764g00007 K00001 - gmx:100819938 719.924