Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12764g00006 ATGGCCATGGGATCACGTTCCTCTTCCTTCACCTATGATGTTTTCCTCAGCTTCAGAGGGGAAGACACACGCCATGGTTTTACTGGCCACCTCTACAAAGCCCTTCATGACAGGGGAATCTACACCTTCATTGACGATGAAGAGCTTCAGAGAGGGGAGGAAATAACACCAGCACTTGTGAAGGCAATTGAAGAGTCCAGGATTGCCATCACTGTGCTCTCTATAAACTATGCTTCTTCCTCATTTTGCTTAAATGAACTTGACTACATCCTTGAGTGCTTTAACAAAAAATATATGTTGGTTTTGCCAGTTTTCTTTAAGGTGGATCCTTCTGATGTTAGACACCAGAAAGGTAGTTATGGAGAAGCATTAGCTAAGCATGAGCAAAGGTTCAACCATAGCATGGAGAAGCTGGAGAATTGGAAGAAGGCTTTGCATCAAGTAGCTAACTTGTCTGGCTTTCATTTGAAACATGGAGATGGATATGAACATGAGTTTATTGGAAAGATAGTTGAGTTGGTATCCAGCAAGATTAATCACGCTCCTTTACCTGTTGCGGATTACCCAGTTGGACTAGAGTCACAAGCACTGGCAGTAAGGAAGCTTTTGGATGTTGGATCTGATGATGTCCACATGATAGGAATCTATGGAACCGGTGGGATAGGAAAATCAACACTTGCTTTAGCAGTTTATAATTTGATTGTTCACCATTTTGATTGTTCGTGTTTTCTTCAAAACGTGAGAGAAAAATCAAACAAGCATGGGTTACAACACCTCCAAAGCATCCTTCTTCGGGAAATGCTTGGAGAGAAGGAAGCAAACTTTGCAAGTGTAGAACAAGGAGCTTCAGTGATACACCATAGGTTTCAAAGAAAGAAGGTTATCTTGATTCTGGATGATGTTGACAAATACGAGCAATTGCAGGCTATTGTTGGAAGACCTTGTTTGTTTGGTCCTGGCAGCAGAGTCATCATCACTACTCGGGACAAACAATTATTGTCATCTTATGGGGTTATAAGAACGTATGAGGTGAAGTTATTGGACAAGAACAATGCTCTTGACTTGCTTTCATGGAAAGCTTTTAAAACAAAAAAAATTGATGCAAGTTATAAGGAGGTCTTGAATGATGTAGTGATTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCCAACTTGTTTGGAAAAAGTATAGAAGAATGGAAATCTGCTATCAAACAGTATAAAAGAATTCCTAATAATCAAATCCTAGAGATACTTAAAGTGAGCTTTGATTCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGATATTTGTTGGTTAAATAGATATCCCTTGTCAAAGGTTGAAGATTTACTTCTTGCTCATTATGGCGATTGCATGAAATATCATATTGGGGTGTTGGTTGACAAATCTCTTATAAAGTTGAGTCAGTATACTCTAGAAACTAGAATTGCATTGCATAGCTTGATCCAGGACATGGGTAAAGAAATTGTCAGGCAAGAATCACCAAAAGATCCAGGGAAGCGCAGTAGATTATGGTTACCGGAAGATATAATTCAAGTTTTGGAAGATGACAAGGGAACTAGTGAAATTGAAATCATATGTCTGGATCTTCCAAAATTTGACAAAGAAGTAATAGTAGAATTCAATACAAAAGCATTCAAGACTATGAAAAACCTCAGAACACTTATTCTTAGGAATGGTAATTTTTCCGAAGGTCCCAAACACCTTCCAAATAGTTTGAGAGTGTTGGAATGGTGGGGATATCCTTCACATTGTTTACCATCTGATTTTCATCCGAAAAAACTTGCCCTATGCAAGTTATCCCGTAGCTCCATTTCATCCCTTGAGTTTTCAAAGGATTTCATGAATCTTAGAGTATTGAATTTTGATTGGTGCAAATGTTTAACACAGATACCTGACATGTCTGTTCTCCAAAATTTGGAAGAACTTTCATTTAAATGTTGTGTGAATCTAATTACAGTTCACAACTCAGTTGGTTTTCTGGATAAACTTAAAACATTGAGTGCTTTTAGCTGCGAAAAGCTTAGGAGTTTCCCGCCTATCAAGTTGACCTCTCTTGAAAAACTTGATCTTTCAGGTTGTCACAGTCTGAAGGGTTTTCCAGAAGTATTAGTTAAGATGGAAAACATAAGGGAACTTAATTTGGAGGGCTGTCCCATAGCAGAATTGCCACTTTCATTTCAAAATCTTACCGGGCTTCCGTCATTAGAAATGTTTTTTTCAAATAGTGCAATTGTTAAGGTGCCCAGTAGCATTACCATGATGCCAAAACTGGCTGATATCTACGCTAGAGGATTGAAAGGGTTGCAATGGCTAAAACAGGAAGATGGTGAAGAACAAATGGGGCCAGGAGTAGTACCTTCAAAGGTAGAATGGCTTACTGCCTCAGATTGCAACCTCTATGATGATTTCTTTTCGATAGATTTGACAAGGTTTGCTCGTCTGAAGAATTTATGGCTACCTAAGAATAATTTCACCATCCTTCCTGAATGTCTGAAACAATGCCAATTTTTATCGAATCTTAATGTGAGTGATTGCAAGCATCTTCGGGAAATTAGAGGCATTCCACCAAACTTAAAGCGTTTCTTTGCAATAAACTGTAAATCCTTGGCTTCCTCGAGTAAACGCATGCTCCTAAATCAGGAACTGCACGAGGCTGGAAACACTGTGTTTTGTTTGCCAGGATTTAGTATTCCAAAGTGGTTCAATCACCAGAATCGGGGAACTTCAATTTCTTTCTGGTTTCGTAATAAGTTCCCTGACAAAGTTCAGTGTGTTCTTGTTGCACCTATGCAGCACCGTTATTTTCGTCCCAGGGTTTTCATCAATGGAAAACAATATACCTTCTATGATCACTATTACTTGACAGGGAATCATCATAAATATCTGTTTGATCTGCGAAAGACAAGTTTCAGAAAAAGTCCGTATGAGGTGCCTTTTGATAGTGAATGGAACCATGCGAAGGTTACATTTCCAGAGGGAAAATATACCTCTATTAACCGTGCAAAAATCGGAATCCACATAGTCAAACAGGAAAATAACATGGAGGATGTTAGATTCACTGATCCATGCAGCAAGAGAAAATCAGATGTTGATATCAGCATTTCTGACTCAGAATCTATACCGGTTGCTAAAGAGCATAGGTTTCTGGATTTTGACCTTTGA 3198 0.3874 MAMGSRSSSFTYDVFLSFRGEDTRHGFTGHLYKALHDRGIYTFIDDEELQRGEEITPALVKAIEESRIAITVLSINYASSSFCLNELDYILECFNKKYMLVLPVFFKVDPSDVRHQKGSYGEALAKHEQRFNHSMEKLENWKKALHQVANLSGFHLKHGDGYEHEFIGKIVELVSSKINHAPLPVADYPVGLESQALAVRKLLDVGSDDVHMIGIYGTGGIGKSTLALAVYNLIVHHFDCSCFLQNVREKSNKHGLQHLQSILLREMLGEKEANFASVEQGASVIHHRFQRKKVILILDDVDKYEQLQAIVGRPCLFGPGSRVIITTRDKQLLSSYGVIRTYEVKLLDKNNALDLLSWKAFKTKKIDASYKEVLNDVVIYASGLPLALEVIGSNLFGKSIEEWKSAIKQYKRIPNNQILEILKVSFDSLEEEEKSVFLDICWLNRYPLSKVEDLLLAHYGDCMKYHIGVLVDKSLIKLSQYTLETRIALHSLIQDMGKEIVRQESPKDPGKRSRLWLPEDIIQVLEDDKGTSEIEIICLDLPKFDKEVIVEFNTKAFKTMKNLRTLILRNGNFSEGPKHLPNSLRVLEWWGYPSHCLPSDFHPKKLALCKLSRSSISSLEFSKDFMNLRVLNFDWCKCLTQIPDMSVLQNLEELSFKCCVNLITVHNSVGFLDKLKTLSAFSCEKLRSFPPIKLTSLEKLDLSGCHSLKGFPEVLVKMENIRELNLEGCPIAELPLSFQNLTGLPSLEMFFSNSAIVKVPSSITMMPKLADIYARGLKGLQWLKQEDGEEQMGPGVVPSKVEWLTASDCNLYDDFFSIDLTRFARLKNLWLPKNNFTILPECLKQCQFLSNLNVSDCKHLREIRGIPPNLKRFFAINCKSLASSSKRMLLNQELHEAGNTVFCLPGFSIPKWFNHQNRGTSISFWFRNKFPDKVQCVLVAPMQHRYFRPRVFINGKQYTFYDHYYLTGNHHKYLFDLRKTSFRKSPYEVPFDSEWNHAKVTFPEGKYTSINRAKIGIHIVKQENNMEDVRFTDPCSKRKSDVDISISDSESIPVAKEHRFLDFDL 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12764g00006 1065 Gene3D - 5 181 IPR035897 -
Vium12764g00006 1065 Gene3D - 182 340 IPR027417 -
Vium12764g00006 1065 Gene3D - 346 430 IPR042197 -
Vium12764g00006 1065 Pfam NB-ARC domain 201 412 IPR002182 GO:0043531
Vium12764g00006 1065 Coils Coil 124 144 - -
Vium12764g00006 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Vium12764g00006 1065 PRINTS Disease resistance protein signature 692 708 - -
Vium12764g00006 1065 PRINTS Disease resistance protein signature 288 302 - -
Vium12764g00006 1065 PRINTS Disease resistance protein signature 212 227 - -
Vium12764g00006 1065 PRINTS Disease resistance protein signature 381 395 - -
Vium12764g00006 1065 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 713 IPR044974 GO:0006952
Vium12764g00006 1065 Gene3D Ribonuclease Inhibitor 710 897 IPR032675 -
Vium12764g00006 1065 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Vium12764g00006 1065 SMART till_3 11 151 IPR000157 GO:0007165
Vium12764g00006 1065 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Vium12764g00006 1065 SUPERFAMILY L domain-like 544 903 - -
Vium12764g00006 1065 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 180 - -
Vium12764g00006 1065 Pfam TIR domain 12 180 IPR000157 GO:0007165
Vium12764g00006 1065 Gene3D Ribonuclease Inhibitor 532 709 IPR032675 -
Vium12764g00006 1065 SUPERFAMILY "Winged helix" DNA-binding domain 417 526 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12764g00006 Vium-Chr12764 19064 23432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12764g00006 7 814 WRKY Transcription Factor Family AT4G12020 31.542 2.83e-81 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12764g00006 - - var:108346072 1753.41