Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1275g00036 ATGGAGGATCAAGCGAATCAAGCGCCACCGCAGCACGATGAAGAGGAGGATTCTAAGAAGGAAGAAGATGAATTGGTAACGAAGGTTAACAAACTCATGGAGAAGATCACTTCCACGCCTGATAACCCTAACGCCACCGTTCTCCACGCTCTTGCCTCTATTCTCGAAACACAAGAGTCAAGATACATGGATGAGAATGGCCATTCTTCCTCCAGTACTGCCCGTGCCGCTCATGTCATTGGTCGTCTTGGAGGTTTAATTCGGGAAAATGATGAGTTTTTTGAGTTGATATCTTCAAAGTTTCTGTCAGAGACAAGATACTCAACCTCTGTTCGAGCTGCTTCTGGAAGACTTCTCCTATGCTGTTCACTAACATGGATTTATCCTCATGTTTTTGAAGAACCGGTCATGGAAAACATAAAAAATTGGGTGATGGATGATAACACTGGGCTGTCTTCTGAAGAGCAGAATCTGAAGCATAGTTCCGGGAGAAGGGAGGCATCAGACTCTGAAATGTTGAAAACCTACTCTACTGGACTCCTTGCTGTTTGTTTGGTTGGTGGAGGTCAAATTGTTGAAGATGTATTGACATCTGGCTTGTCAGCTAAGCTTATGCGATATCTTCGTTTACGTGTTCTGGGAGAGACAAGTAGCAACCAGAAAGATGTTACTCATATGACAGAGAGTAGGCATGCATCTGCGAATACTTCAGGGAGAGCTAGAGATGACGGTCGTGGCAGATTTCGCCAGCTCCTTGAACCAAATCATTTGGATGATACTAGGATGATTGATGAGAGATCTTTAGATGATGTAAGTCTTGAAAGGGCTCCAGATAGAAGCATTAGTGGACAAACACATCAAGAAGGATCTTGGATAGAAGGTGAACCACCTGATGGGCTTGGTGAAGGTGTTGATGTCCAGGAGGTAGATTCTGATGGGGAAGATAGATGGCGTTACAGAGATATACGTGATGGAAGGATAAAATACAGTGAGCATGATGACAATGTTAGAGATGACTCTTCAAGGCGGCGTTCAAACCGTGGATGGGGAAGATCTAAAGGGAAAGGAAGGGTCGCTGAAGGGACTGTAGAGAGTGATTCCATTTTATCATCTCCTGGTTCTGGTAGTAGATTAGTACAGGGTCGGAGAGATAGAAGCGTAATGAGGAATGCTGATTTTAGGAGGGTGGCTGAGTCTAAGAAGACCCTTGGCAGGATCTCTTTGGAGTCTTCTGGTTTTGAAAGAGATGATCATGATGATTGTTTCCATGAATGCCGAATTGGAAATAAAGATATAACTGATCTCGTCCGGAAAGCAGTTCAAGCTGCTGAAGCTGAAGCCAGATCAGCCAATGCACCCGAAGAAGCTGTCAAAGCAGCTGGTGATGCTGCTGCTGACCTGGTTAAAACTGCAGCTTCAGAGGAATATAAATCCTCTGATAATGAAGAAGCAGCTTTTTTGGCTGCTTCTAAAGCTGCATCAACTGTTATTGATGCTGCAACTGCAGTTGAAGTTTCAAGGAGTTCTATTGGCAACAATACTGTAACAGAGAACGAGAGTGGCAAAGAAACAGAAACTAATGAGGATGTGGAAGAGTACTTCATCCCAGATACTCAATCACTTGCACAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTACTTGGCCCTGTGTTGCACGAGAAGGGAGTTGATGTGTGTCTTGCACTTCTGCAGCAGAATTCTAAACATCGGGAGCCATCCAAGGTTGCTTTGCTGTTGCCCGATGTCATGAAACTAATATGTGCTTTGGCTGCACATAGGAAATTTGCTGCACTTTTTGTGGACCGAGGGGGAATGCAAAAGCTTCTTGCTGTCCCTAGAATGGCACAGACTTTCTTTGGTCTTTCTTCTTGTCTATTCACTATTGGCTCTCTTCAGGGTATAATGGAAAGGGTTTGTGCTCTTCCATCACAAGTTGTTTATCACGTTGTTGAGTTAGCTCTACAACTTCTTGACTGCAATCAAGATCAAGCCCGTAAGAATGCAGCATTGTTTTTTGCTGCTTCGTTTGTCTTCAGAGCGGTTCTTGATGCCTTTGATTCCCTAGATGGATTACAGAAATTACTGGGCCTTCTAAATGATGCTGCTTCTGTAAGATCAGGAATAAATTCTGGAGCCTTGAGTTTATCTAACTCAGGATCACTTCGAAATGATCGATCATCTGCAGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTATCACACTTGTGTTGCTTTGAGGCAATATTTCAGGGCCCATCTCCTTGTGTTAGTGGACTCCATTCGTCCTAACAAGAGCAATCGTAGTGCTGCTAGAAATATTCCAAGTGTAAGGGCTGTGTACAAGCCCCTTGATATTAGTAATGAGGCAATGGATGGAGTATTCCTACAATTACAAAAGGACCGGAAGCTAGGTCCTGCATTTGTTAGAACACGTTGGCTAGCTGTTGAGAAGTTCTTGGCATCTAATGGACATGTTACCATGTTGGAGTTATGTCAGGCCCCACCAGTGGAGCGATATCTGCATGATCTGCTTCAGTATGCTTTGGGTGTTCTGCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATCGTAAATGTAACTTTAAGCAACAATCGTGTTGGTATTGCGGTAATTTTGGATGCTGCAAATATAGCTAGTAATCATGTGGACCCAGAGATAATTCAACCAGCACTAAATGTTTTAGTCAATCTTGTTTGCCCTCCTCCTTCAATAAGCAATAAACCGGCTATGGTTGCACAAGGTCAGCAGTTGCCATCCTCCCAGACATCTAATGGTCCTCCCTCAGAGGCTAGAGATAGAAATGCTGAACGAAGTGTTTCAGATCGAGGTGTTCACTCTACTAGCCAGATTGATCCTAGGGAGAGGAATGGGGAGTCCAATGCTATAGATCGAGGCAATGCTGCAAGCTTAAGTACACAGGCTGTTGGTAGTACTCCACAAACTCCAGTTGCTTCTGCAACTTCTGGATTGGTTGGCGACCGAAGAATATCTTTGGGTGCAGGAGCAGGTTGTGCAGGCCTTGCTGCACAACTGGAACAAGGATATCGTCAGGCAAGAGAGACTGTCCGATCCAATAATGGTATAAAGGTTCTTCTTCATCTCCTCCAACCACGAATATATTCACCTCCTGCTGCACTGGACTGTCTTCGGGCCCTAGCATGTCGAGTCCTGCTTGGATTAGCCAGAGATGATACAATTGCACACATATTGACAAAGCTCCAGGTTGGGAAAAAGCTGTCAGAACTGATTCGGGATTCTGGTAGCCAAACTCCTGGAACGGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCCATTGAGCTTATTGGGATTGTGACTAATTCTGGCCGTGCAAGTACATTAGCTGCCACTGATGCAGCTACTCCTACTTTAAGGCGCATAGAAAGAGCAGCTATTGCTGCTGCTACTCCTATTACTTACCATTCAAGGGAACTTTTGCTTCTAATTCATGAACACCTACAGGCATCTGGATTGGCACAAACTGCTTCTATGTTGCTTAAAGAGGCACAGTTTACTCCTTTGCCATCATTGGTTCCTGCCTCTTCCCTTCCACAACAGCCCACAACACAGGAAGCTTCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCTTCTGGATTTCTCTCTAACAAATTAAAGTTTAACTCAAAGGATGAGGATCCCGTCTTCAAAAGTGAATCTGTCTCTGCAAAGAAAAAATCACTAACTTTCTCATCATCTTTTCATTCAAGACTCCAACTTCTTGATTCTCAACAATCATCTGTGAGGAAATTGTCAAATACTGCTAAAGAATCTTTAGAAACCAGTGTAGTAGAGACTGGATCGGAATCTTCAGTGAAACATAACATTGATAATGGATCTCAGTTTAAGACTCCAGTAGCTGTGCTAGCAAAACGGAAGTTATCTGATTTGAAGGACATATCAATGTTTTCTTCATCTGGAAAACGATTAAATGTTGGGGATCAAGGACTCCGCTCTCCTATTTGTTCAAGTGCAATTCGTAAAAGCAGCCTGCAACCTGATGCAGTTGGACTTTTCACCCCAACTTGTAACGTGAAAAATCAACATAGCCGTTGTACGGGTGACTTGGTGGACGAGAATCAGTGCAGTATGTCAAATCTATGTCAGATGACACCATCCTCCCAAGTTTTAAACGACCTTCAGCCCAGCAACCCTGAGCGTGTAACATTAGATTCTCTAGTGGTTCAGTATTTGAAGCATCAACATCGCCAATGTCCAGCTCCTATTACAACACTTCCTCCACTGTCACTTCTGCACCCGCATGTCTGTCCTGAACCAAAGCGAAGCCTTGATGCGCCTTCTAATGTGACCGCAAGGCTTGGTACACGCGAGTTTAAATATATGTATGGTGGAGTACATGGGAATCGCAGGGATCGTCAATTTGTTTACAGTCGGTTTAGGCCTTGGCGCACATGTCGGGATGATGCTGGTGCCTTGTTAACATGCATTACATTTGTTGGGGACTCCTCTCATATTGCTGTTGGAAGCCATAATGGGGAGCTCAAATTTTTTGAATCCAACAACAGCAATGTAGTAGAGAGTTTCACAGGTCATCAGGCTCCTTTGACTCTTGTTCAGTCTTTTGTTTCAGGCGAGACCCAGCTATTACTTTCTTCAAGCTCCCAAGATGTTAGATTGTGGGACGCAACTTCAATTTTAGGTGGTCCTAGCCATTCATTTGAAGGATGCAGGGCAGCCAGGTTTAGCAATTCTGGGAATGTTTTTGCAGCCCTGTCATCAGAATCTTCCCGACGGGAGATCCTCTTGTATGATATCCAAACATGTCACTTAGAGTCGAAGTTGACAGATACATTTGCAACTTCTACAGGGCGTGGTCACGTTTATTCTTTAATCCATTTTAATCCTTCTGACTCAATGCTTCTTTGGAATGGTGTCTTGTGGGATCGACGTGTCTCTGGTCCTGTTCATCGCTTTGATCAGTTTACAGATTATGGTGGTGGAGGCTTTCATCCTGCTGGCAACGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGATTGCTACGCAGTGTGCCTTCATTGGATCAAACATCAATAACATTCAATGCGCGTGGTGATGTAATGTATGCTATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACTCGACGCGTCAAGCATCCTCTTTTTTCAGCTTTCCGCACAGTGGATGCAGTTAATTATTCTGACATTGCAACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCTACAGACTCATTTGTTGGGCTGATTACCATGGATGATCAGGATGAGATGTATGCTTCTGCCAGAATATATGAAATTGGTCGTCGGAGGCCAACGGATGATGATTCCGATCCTGATGATGCTGAAAGTGAGGAGGAAGATGAGGATGACGACGACGATGATGGTGATGTTGATCCTCTTTTAGGCCCTGGTCTTGGTGGGGATAGTGGCAGTGATGCTGATGATATGAGCAATGATGACGAGGAGGATGATAGTGTGAGTGATCTTGATGAAGATGAGGATGGAGATTTTATTTTGGATGATGTAGACTTTGATGGTGGACCTGGCATATTGGAGATCGTGACAGAAGGTGACGAAGATGATGATGATAGTCAGGTACTTGAATCCTTAAGTAGTGATGATGAGGATTTTGTGGGTAATGGCTTTGGGTATTAA 5814 0.4407 MEDQANQAPPQHDEEEDSKKEEDELVTKVNKLMEKITSTPDNPNATVLHALASILETQESRYMDENGHSSSSTARAAHVIGRLGGLIRENDEFFELISSKFLSETRYSTSVRAASGRLLLCCSLTWIYPHVFEEPVMENIKNWVMDDNTGLSSEEQNLKHSSGRREASDSEMLKTYSTGLLAVCLVGGGQIVEDVLTSGLSAKLMRYLRLRVLGETSSNQKDVTHMTESRHASANTSGRARDDGRGRFRQLLEPNHLDDTRMIDERSLDDVSLERAPDRSISGQTHQEGSWIEGEPPDGLGEGVDVQEVDSDGEDRWRYRDIRDGRIKYSEHDDNVRDDSSRRRSNRGWGRSKGKGRVAEGTVESDSILSSPGSGSRLVQGRRDRSVMRNADFRRVAESKKTLGRISLESSGFERDDHDDCFHECRIGNKDITDLVRKAVQAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSSDNEEAAFLAASKAASTVIDAATAVEVSRSSIGNNTVTENESGKETETNEDVEEYFIPDTQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREPSKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALPSQVVYHVVELALQLLDCNQDQARKNAALFFAASFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGINSGALSLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMDGVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHVTMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPAMVAQGQQLPSSQTSNGPPSEARDRNAERSVSDRGVHSTSQIDPRERNGESNAIDRGNAASLSTQAVGSTPQTPVASATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQARETVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTPGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLAQTASMLLKEAQFTPLPSLVPASSLPQQPTTQEASSTQIQWPSGRTPSGFLSNKLKFNSKDEDPVFKSESVSAKKKSLTFSSSFHSRLQLLDSQQSSVRKLSNTAKESLETSVVETGSESSVKHNIDNGSQFKTPVAVLAKRKLSDLKDISMFSSSGKRLNVGDQGLRSPICSSAIRKSSLQPDAVGLFTPTCNVKNQHSRCTGDLVDENQCSMSNLCQMTPSSQVLNDLQPSNPERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKYMYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFESNNSNVVESFTGHQAPLTLVQSFVSGETQLLLSSSSQDVRLWDATSILGGPSHSFEGCRAARFSNSGNVFAALSSESSRREILLYDIQTCHLESKLTDTFATSTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFSAFRTVDAVNYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDGDVDPLLGPGLGGDSGSDADDMSNDDEEDDSVSDLDEDEDGDFILDDVDFDGGPGILEIVTEGDEDDDDSQVLESLSSDDEDFVGNGFGY 1937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 1907 1923 - -
Vium1275g00036 1937 SUPERFAMILY WD40 repeat-like 1508 1738 IPR036322 GO:0005515
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 1210 1238 - -
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 1866 1894 - -
Vium1275g00036 1937 PANTHER VPRBP PROTEIN-RELATED 15 1934 IPR033270 GO:0016567
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 332 346 - -
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 219 234 - -
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 933 954 - -
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 1817 1937 - -
Vium1275g00036 1937 ProSiteProfiles LIS1 homology (LisH) motif profile. 1174 1206 IPR006594 GO:0005515
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 932 987 - -
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 1 24 - -
Vium1275g00036 1937 Gene3D - 1507 1831 IPR015943 GO:0005515
Vium1275g00036 1937 FunFam DDB1-and CUL4-associated factor homolog 1 1504 1831 - -
Vium1275g00036 1937 SMART WD40_4 1506 1546 IPR001680 GO:0005515
Vium1275g00036 1937 SMART WD40_4 1549 1589 IPR001680 GO:0005515
Vium1275g00036 1937 SMART WD40_4 1594 1632 IPR001680 GO:0005515
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 219 247 - -
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 332 384 - -
Vium1275g00036 1937 SUPERFAMILY ARM repeat 558 1114 IPR016024 -
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 1830 1851 - -
Vium1275g00036 1937 MobiDBLite consensus disorder prediction 268 312 - -
Vium1275g00036 1937 SMART Lish 1174 1206 IPR006594 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1275g00036 1533 1739 U-box Gene Family AT2G33340 24.554 9.02e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1275g00036 K11789 - gmx:100800133 3008.01