Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1275g00029 ATGTCGATGTCGTCTAAAGAGAGAAGATGCTCAAGCAGCGAAATGGCCTCTGTTTCAAGTACCATCTTTCCAGTATTTTGCACCCCCATCTTTGATGTAGAAGGTTACTCCAACCTAAGAAAACACGTCATTGCTCCCTATGACCGTATATATCAATTGTGGCAAACGTTCGTAGTGGCTTTGGTAGTGTACTCTGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGAACTGTTAGTTGGGTCATATTTGACCGTTGTTGATCTCCTTGTTGACGCCTTCTTTGCAGTTGATATAGTCCTTACTTTCTTTGTGGCTTACTTCGATACATCAACGTATCTCCTCGTCGACGATCATAAGAAGATTGCTCTCAGGTACGTCAAAAAGCTGCACTTCACTATGGATCTAGCCTCCACTCTGCCAATTGAGAAGATATATCAAATTCTGACGGGCAAGCCAACCAGAAGCGAGGTATTTGGTTTCCTAATTATGCTAAGACTCTGGAGATTGAGGCGTGTTAGCGAACTCTTCGCGAGGCTAGAGAAAGACATACGAATCAATTATTCTGCAACAAGATTTTGCAAACTTATATGTGTTACACTATTTGCAGCACACTTCGCAGGCTGCATGTTTTTTTGGTTGGCTGTCCAGCACAAGACACCGAAACACACATGGATCGGGAACAAAACACAGGATTTTCATGAATTGGGCGTCGGGTTGGGTTACACTTATTCTGTGTACTGGTCTGTTTCAACCCTTACCACCGTTGGATATGGAGATTTTTATGCAGTAAATTTAACGGAGATGCTTTTCTCCATTTTTTACATGCTCTTTAACATCGGCCTCGGAGCATATATTATTGGAAACATGACAACTCTGTTGGTTCATAGCTCTGTCGGAACCTTTGCCGTGGCTTCACAGAGGGATGTCTTCAACAAAATATTACAGTATGCAAACAAAAATAGACTCCCGGGACGATTAAAGGAGCAAATATTGGCACACATGCAATTGAAATTTAAGACTGCAGAGTTACAGCAAGAAGTGTTACAAGACCTACCTAAAACTATAAGATCCAGTATTGCTCAGCATCTTTTCAAAAACATTGTTGAAACAGCATATTTATTCAAAGGAGTTTCTGATTATTTTATCACTCAGCTGGTCTCAGAAACAAAGGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAAAATATTTCTACATCTTGTTATCTGGGTCACTGGATGTGTTGATATACAATACTGGGTCTGAACAGTTTTTATTCGAACTTGAATCTGGAGACATGGCAGGAGAAATAGGTGTGATGTTTAATATTCCACAACCTTTTACAGTAAGAAGTAGAGGGCTGTCCCAGGTCATACGAATCAATCATCATCACTTCAAGCAGATGATGCAACCATTCAGTGACGATGGGAAGGCAATCATGTACAACTTTATTCAGCATTTGAAGGGTCTCAAAAGCAAGGTGCTAGAAGAAATATCGTATGTGACAGAATTGCTGGGTTACCTTGAGCATCTGAGACAAAATGAGGGTACACTTCATGAAGTTTCAAGATATCAAGATCCATATAAAGAAGGAAAAACAGGAAATTCCAAACCACTGAGAAGCCCAGTCCCCGTTAGAGTTACAATCCACGGACACCATCCCAATGAAAACAAAACGGGAAATGGATCAACGCCAAAGCTCATACTTCTCCCAAATTCGATAGAAGATATTTTCAGACTTGCAGAGAGAAAATTCGGAAAAAGAGGAAGCAAAATTCTCATGGCTGACGGCACAGAAGTAGAACAATTAAACGCGATAAGGGAGACTGATGAGTTGTATATCCTCTAA 1869 0.4077 MSMSSKERRCSSSEMASVSSTIFPVFCTPIFDVEGYSNLRKHVIAPYDRIYQLWQTFVVALVVYSAWASPFELAFRELLVGSYLTVVDLLVDAFFAVDIVLTFFVAYFDTSTYLLVDDHKKIALRYVKKLHFTMDLASTLPIEKIYQILTGKPTRSEVFGFLIMLRLWRLRRVSELFARLEKDIRINYSATRFCKLICVTLFAAHFAGCMFFWLAVQHKTPKHTWIGNKTQDFHELGVGLGYTYSVYWSVSTLTTVGYGDFYAVNLTEMLFSIFYMLFNIGLGAYIIGNMTTLLVHSSVGTFAVASQRDVFNKILQYANKNRLPGRLKEQILAHMQLKFKTAELQQEVLQDLPKTIRSSIAQHLFKNIVETAYLFKGVSDYFITQLVSETKAEYYPSKVDIILQNEMPKYFYILLSGSLDVLIYNTGSEQFLFELESGDMAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHFKQMMQPFSDDGKAIMYNFIQHLKGLKSKVLEEISYVTELLGYLEHLRQNEGTLHEVSRYQDPYKEGKTGNSKPLRSPVPVRVTIHGHHPNENKTGNGSTPKLILLPNSIEDIFRLAERKFGKRGSKILMADGTEVEQLNAIRETDELYIL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1275g00029 622 SUPERFAMILY cAMP-binding domain-like 308 494 IPR018490 -
Vium1275g00029 622 FunFam Potassium channel KAT3 53 296 - -
Vium1275g00029 622 ProSiteProfiles cAMP/cGMP binding motif profile. 374 493 IPR000595 -
Vium1275g00029 622 Gene3D - 51 296 - -
Vium1275g00029 622 Gene3D Jelly Rolls 345 508 IPR014710 -
Vium1275g00029 622 ProSiteProfiles KHA domain profile. 553 622 IPR021789 -
Vium1275g00029 622 Pfam Cyclic nucleotide-binding domain 395 477 IPR000595 -
Vium1275g00029 622 FunFam Potassium channel KAT2 362 498 - -
Vium1275g00029 622 Pfam KHA, dimerisation domain of potassium ion channel 553 621 IPR021789 -
Vium1275g00029 622 Pfam Ion transport protein 52 293 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium1275g00029 622 CDD CAP_ED 374 487 IPR000595 -
Vium1275g00029 622 SUPERFAMILY Voltage-gated potassium channels 46 295 - -
Vium1275g00029 622 PANTHER POTASSIUM CHANNEL AKT1 34 500 IPR045319 GO:0005249|GO:0006813
Vium1275g00029 622 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1275g00029 622 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1275g00029 622 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1275g00029 622 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1275g00029 622 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1275g00029 622 SMART cnmp_10 374 491 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1275g00029 Vium-Chr1275 191445 198432 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1275g00029 8 621 Ion Channels AT4G32650 54.114 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1275g00029 K21867 - gmx:100794620 1007.67