Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1275g00027 ATGGCAGTGTCTAGCAAATATTTGTTGAAAGTACTAAGGCTAGAGAAAGACATACGAATCAATTATTCTGCAACAAGATTTTGCAAACTTATATGTGTTACACTATTTGCAGCACACTTCGCAGGCTGCATGTTTTTTTGGTTGGCTGTCCAGCACAAGACACCGAAACACACATGGATCGGGAACAAAACACAGGATTTTCATGAATTGGGCGTCGGGTTGGGTTACACTTATTCTGTGTACTGGTCTGTTTCAACCCTTACCACCGTTGGATATGGAGATTTTTATGCAGTAAATTTAACGGAGATGCTTTTCTCCATTTTTTACATGCTCTTTAACATCGGCCTCGGAGCATATATTATTGGAAACATGACAACTCTGTTGGTTCATAGCTCTGTCGGAACCTTTGCCGTGGCTTCACAGAGGGATGTCTTCAACAAAATATTACAGTATGCAAACAAAAATAGACTCCCGGGACGATTAAAGGAGCAAATATTGGCACACATGCAATTGAAATTTAAGACTGCAGAGTTACAGCAAGAAGTGTTACAAGACCTACCTAAAACTATAAGATCCAGTATTGCTCAGCATCTTTTCAAAAACATTGTTGAAACAGCATATTTATTCAAAGGAGTTTCTGATTATTTTATCACTCAGCTGGTCTCAGAAACAAAGGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAAAATATTTCTACATCTTGTTATCTGGGTCACTGGATGTGTTGATATACAATACTGGGTCTGAACAGTTTTTATTCGAACTTGAATCTGGAGACATGGCAGGAGAAATAGGTGTGATGTTTAATATTCCACAACCTTTTACAGTAAGAAGTAGAGGGCTGTCCCAGGTCATACGAATCAATCATCATCACTTCAAGCAGATGATGCAACCATTCAGTGACGATGGGAAGGCAATCATGTACAACTTTATTCAGCATTTGAAGGGTCTCAAAAGCAAGGTGCTAGAAGAAATATCGTATGTGACAGAATTGCTGGGTTACCTTGAGCATCTGAGACAAAATGAGGGTACACTTCATGAAGTTTCAAGATATCAAGATCCATATAAAGAAGGAAAAACAGGAAATTCCAAACCACTGAGAAGCCCAGTCCCCGTTAGAGTTACAATCCACGGACACCATCCCAATGAAAACAAAACGGGAAATGGATCAACGCCAAAGCTCATACTTCTCCCAAATTCGATAGAAGATATTTTCAGACTTGCAGAGAGAAAATTCGGAAAAAGAGGAAGCAAAATTCTCATGGCTGACGGCACAGAAGTAGAACAATTAAACGCGATAAGGGAGACTGATGAGTTGTATATCCTCTAA 1371 0.3931 MAVSSKYLLKVLRLEKDIRINYSATRFCKLICVTLFAAHFAGCMFFWLAVQHKTPKHTWIGNKTQDFHELGVGLGYTYSVYWSVSTLTTVGYGDFYAVNLTEMLFSIFYMLFNIGLGAYIIGNMTTLLVHSSVGTFAVASQRDVFNKILQYANKNRLPGRLKEQILAHMQLKFKTAELQQEVLQDLPKTIRSSIAQHLFKNIVETAYLFKGVSDYFITQLVSETKAEYYPSKVDIILQNEMPKYFYILLSGSLDVLIYNTGSEQFLFELESGDMAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHFKQMMQPFSDDGKAIMYNFIQHLKGLKSKVLEEISYVTELLGYLEHLRQNEGTLHEVSRYQDPYKEGKTGNSKPLRSPVPVRVTIHGHHPNENKTGNGSTPKLILLPNSIEDIFRLAERKFGKRGSKILMADGTEVEQLNAIRETDELYIL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1275g00027 456 FunFam Potassium channel KAT2 196 332 - -
Vium1275g00027 456 ProSiteProfiles cAMP/cGMP binding motif profile. 208 327 IPR000595 -
Vium1275g00027 456 Pfam Ion transport protein 7 127 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium1275g00027 456 SMART cnmp_10 208 325 IPR000595 -
Vium1275g00027 456 SUPERFAMILY cAMP-binding domain-like 142 328 IPR018490 -
Vium1275g00027 456 Gene3D - 4 130 - -
Vium1275g00027 456 ProSiteProfiles KHA domain profile. 387 456 IPR021789 -
Vium1275g00027 456 Pfam Cyclic nucleotide-binding domain 229 311 IPR000595 -
Vium1275g00027 456 Pfam KHA, dimerisation domain of potassium ion channel 387 455 IPR021789 -
Vium1275g00027 456 CDD CAP_ED 208 321 IPR000595 -
Vium1275g00027 456 SUPERFAMILY Voltage-gated potassium channels 13 168 - -
Vium1275g00027 456 PANTHER POTASSIUM CHANNEL AKT1 12 339 IPR045319 GO:0005249|GO:0006813
Vium1275g00027 456 Gene3D Jelly Rolls 179 343 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1275g00027 Vium-Chr1275 183414 189339 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1275g00027 13 456 Ion Channels AT4G32650 53.595 1.51e-166 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1275g00027 K21867 - gmx:100794620 733.791