Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1275g00022 ATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGAGCAGAAGCACAGACACGATATTCCCCGCCATCAAGTTAAACAGGTTATATGTTCACTTTGTGAGACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGGTATGAAAACTGGAGGATGTGAAAATGTCTTCCACTGCTACAAATGTGGTTGTTGCTATCCAACTCAAATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCGTTTGTTTCGAGTATTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCCTGTGGACATACAATACATAAAAGCTGCCTGAATGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGTTTGACATGGAGATTGCTGCTACACCAATGCCTGAAGCATATCGAAACAAAATGATTTGGATCCTTTGCAATGATTGTACTAAAACTTCTCACGTCCAATACCATCTTGTTGCCCAAAAGTGCTTGAACTGCAAATCCTACAACACACGGCAAATAAGAGGCTGA 753 0.4157 MDVNITGEDAVLGPPVAMRFLIAAIVTMRQKIISTLSRSTDTIFPAIKLNRLYVHFVRPNKRFSKTVLTVVFVWASTSVGRVSSLMMMYLRSNIIAVAVEFAGMKTGGCENVFHCYKCGCCYPTQMKNSHPCVEGAMHHDCPVCFEYLFESVNDVLVLPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSMIWEKFDMEIAATPMPEAYRNKMIWILCNDCTKTSHVQYHLVAQKCLNCKSYNTRQIRG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1275g00022 250 Gene3D - 212 250 - -
Vium1275g00022 250 Pfam Ring finger domain 140 183 IPR001841 -
Vium1275g00022 250 SUPERFAMILY RING/U-box 140 192 - -
Vium1275g00022 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 186 IPR013083 -
Vium1275g00022 250 ProSiteProfiles Zinc finger RING-type profile. 141 184 IPR001841 -
Vium1275g00022 250 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 107 249 - -
Vium1275g00022 250 ProSiteProfiles Zinc finger CTCHY-type profile. 75 140 IPR017921 -
Vium1275g00022 250 SUPERFAMILY Zinc hairpin stack 105 134 IPR037275 -
Vium1275g00022 250 SMART ring_2 141 183 IPR001841 -
Vium1275g00022 250 Pfam Zinc-ribbon 188 246 IPR039512 -
Vium1275g00022 250 CDD RING-H2_Pirh2-like 140 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1275g00022 Vium-Chr1275 142797 146807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1275g00022 111 250 C2H2 Transcription Factor Family AT3G18290 40.000 5.56e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1275g00022 K10144 - gmx:100812023 296.204