Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1275g00020 ATGGGAGTGGTGGCAGTATTGCACACTTCTGAGTCTCTGCAGCTTGACTGCAAGGACAAGAAGCATGTGACTGAGAAAGACGTGTATAATCATCTACCATCAAACGAAGAGCACATACTTGGAGAAGAATCAAGTCAATCAACAGATCACCAAAAGATCAATACTTTGCGTGAGAGAGGATATATGGAATATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGAGCAGAAGCACAGACACGATATTCCCCGCCATCAAGTTAAACAGGTTATATGTTCACTTTGTGAGACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATGTCTTCCACTGCTACAAATGTGGTTGTTGCTATCCAACTCAAATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCGTTTGTTTCGAGTATTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCCTGTGGACATACAATACATAAAAGCTGCCTGAATGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGTTTGACATGGAGATTGCTGCTACACCAATGCCTGAAGCATATCGAAACAAAATGATTTGGATCCTTTGCAATGATTGTACTAAAACTTCTCACGTCCAATACCATCTTGTTGCCCAAAAGTGCTTGAACTGCAAATCCTACAACACACGGCAAATAAGAGGCTGA 936 0.4177 MGVVAVLHTSESLQLDCKDKKHVTEKDVYNHLPSNEEHILGEESSQSTDHQKINTLRERGYMEYGCQHYRRRCRIRAPCCNEIFNCRHCHNEAKNNINIEQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKKQYHCSGCGICRTGGCENVFHCYKCGCCYPTQMKNSHPCVEGAMHHDCPVCFEYLFESVNDVLVLPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSMIWEKFDMEIAATPMPEAYRNKMIWILCNDCTKTSHVQYHLVAQKCLNCKSYNTRQIRG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1275g00020 311 SUPERFAMILY Zinc hairpin stack 138 195 IPR037275 -
Vium1275g00020 311 ProSiteProfiles Zinc finger RING-type profile. 202 245 IPR001841 -
Vium1275g00020 311 Gene3D - 273 311 - -
Vium1275g00020 311 Pfam Zinc-ribbon 249 307 IPR039512 -
Vium1275g00020 311 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 37 310 - -
Vium1275g00020 311 Pfam Ring finger domain 201 244 IPR001841 -
Vium1275g00020 311 Pfam CHY zinc finger 66 147 IPR008913 GO:0008270
Vium1275g00020 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 259 IPR013083 -
Vium1275g00020 311 SUPERFAMILY RING/U-box 200 248 - -
Vium1275g00020 311 SMART ring_2 202 244 IPR001841 -
Vium1275g00020 311 SUPERFAMILY CHY zinc finger-like 63 137 IPR037274 GO:0008270
Vium1275g00020 311 ProSiteProfiles Zinc finger CTCHY-type profile. 137 201 IPR017921 -
Vium1275g00020 311 ProSiteProfiles Zinc finger CHY-type profile. 59 135 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1275g00020 Vium-Chr1275 140130 146807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1275g00020 55 311 C2H2 Transcription Factor Family AT3G18290 37.643 2.34e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1275g00020 K10144 - gmx:100812023 610.527