Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1275g00012 ATGTACGTGAAAGCGGCACAGTCATCGTTCCGGGATCGGACGCATGAATTCCACAACATCACTGAGAGGTTGAAGAAGTCCGGATCAGGGCCCACTGGGCCCAGCAGTAGCAGTCATTCCAGATCGGAGGAACAGCGATCGGCGATCGCAAATCAATCGGATTTCAATAGAAGGGCTTCCAAAATTGGCTTCGGAATTCACCAAACGTCTCAGAAGTTAGCCAAGCTCGCCAAGTTGGCGAAAAGGACTTCTGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTGGTGTTATTAAGCAGGATATCACTGCTTTAAACTCAGCGGTGGTGGATCTTCAGTTGCTGTGCAACTCTAGGAATGAGAGTGGAAATGTTTCTGTGGACACAACGAGCCATTCGAGCACCGTGGTGGATGACTTGAAGACGCGGTTGATGAGCGCCACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAATGCACGAGAATAGAAGACAGTTGTTTTCTTCTTCTGCTTCTAAGGATTCAGCTAATCCTTTCATCCGGCAACGGCCCTTGGCTGCTAAGGCGGCAGCTAGTAGTTCTAATGCCCCTGCTGTTCCCTGGGCTAACGAGTCACCATCTTCATCTCAGGTGTTTCCCAAGAAGCGAATGGACACGGAGAGTCAACCATTGTTGCAGCAGCAGCAGCAGCAGCAGGATGTAGTTCCATTACAAGACAGCTACATGCAAAGCAGAACCGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAGCATTTTTAATCAGCTAGCGACGCTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGTCAAACGTAGAGGGAGCACAAGGGGCTTTGTTGAAATATCTGAACAGTATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1017 0.4592 MYVKAAQSSFRDRTHEFHNITERLKKSGSGPTGPSSSSHSRSEEQRSAIANQSDFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSVDTTSHSSTVVDDLKTRLMSATKEFKDVLTMRTENMKMHENRRQLFSSSASKDSANPFIRQRPLAAKAAASSSNAPAVPWANESPSSSQVFPKKRMDTESQPLLQQQQQQQDVVPLQDSYMQSRTEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1275g00012 338 Gene3D - 47 301 - -
Vium1275g00012 338 MobiDBLite consensus disorder prediction 9 23 - -
Vium1275g00012 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium1275g00012 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Vium1275g00012 338 CDD SNARE_syntaxin5 249 327 - -
Vium1275g00012 338 MobiDBLite consensus disorder prediction 203 237 - -
Vium1275g00012 338 MobiDBLite consensus disorder prediction 201 237 - -
Vium1275g00012 338 PANTHER SYNTAXIN 50 330 IPR045242 -
Vium1275g00012 338 SMART tSNARE_6 241 308 IPR000727 -
Vium1275g00012 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Vium1275g00012 338 SUPERFAMILY t-snare proteins 52 301 IPR010989 GO:0016020|GO:0016192
Vium1275g00012 338 MobiDBLite consensus disorder prediction 25 53 - -
Vium1275g00012 338 MobiDBLite consensus disorder prediction 1 53 - -
Vium1275g00012 338 Pfam SNARE domain 282 334 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1275g00012 Vium-Chr1275 83738 87748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1275g00012 1 338 SNARE and Associated Proteins AT3G24350 64.033 3.44e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1275g00012 K08490 - gmx:100811494 497.278