Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1275g00011 ATGCACTCCAAATCGGCGCAGTCATCGTTTAGGGATCGGACGCTTGAATTTCATAGCATTGCGGAGAGGTTGAAGAAGTCGGGATCAGCGCCGAATGGACAAAGCAGCAATTCATCGAGATTGGAGGAGCAGCGATCTGCAATTACAAATCAATCAGAGTTCAACAGAAGAGCTTCCAAGATTGGCTTCGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTTGCCAAGTTGGCTAAGAGGACCTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTTACGGGGGTAATTAAGCAAGATATCACTGCGTTAAACTCTGCGGTTGTGGATCTTCAATTGCTTTGCAACTCAAGGAACACGAGTGGGAACGCTTCCACCGACACCACTATGCATTCAACAACGGTGGTTGATGACCTCAAGACGCGGCTGATGGGCGCCACTAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGGGCACGAGAATAGAAGACAGCTGTTTTCGGCCTCTGGTTCTAAGGATTCTGCAAATCCTTTTGTCCGGCAACGGCCGTTGGCTACCAGATCGGCTGCTAGTAGTTCTAATGCCCCTGCTCCACCATGGGCTAGTGGATCATCTTCATCTCAGTTGTTTGCTAAAAAACAGGTTGATGGGGAGAGTCAACCGTTGCTGCAACAGCAGCAACAAGAGGTAGCCCCATTGCAAGATAGCTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCACGAGCTTAGCAACATCTTTAATCAGCTAGCAACACTTGTTTCCCAACAGGGAGAAGTTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGGGCTCAAGGGGCTTTATTAAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTGATATTTTTTCTTATGGTTTTCTTATTTTTTGTGGCATAG 1005 0.4607 MHSKSAQSSFRDRTLEFHSIAERLKKSGSAPNGQSSNSSRLEEQRSAITNQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNTSGNASTDTTMHSTTVVDDLKTRLMGATKEFKDVLTMRTENLKGHENRRQLFSASGSKDSANPFVRQRPLATRSAASSSNAPAPPWASGSSSSQLFAKKQVDGESQPLLQQQQQEVAPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1275g00011 334 Gene3D - 49 297 - -
Vium1275g00011 334 CDD SNARE_syntaxin5 245 323 - -
Vium1275g00011 334 SMART tSNARE_6 237 304 IPR000727 -
Vium1275g00011 334 SUPERFAMILY t-snare proteins 51 297 IPR010989 GO:0016020|GO:0016192
Vium1275g00011 334 MobiDBLite consensus disorder prediction 192 232 - -
Vium1275g00011 334 PANTHER SYNTAXIN 47 326 IPR045242 -
Vium1275g00011 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Vium1275g00011 334 MobiDBLite consensus disorder prediction 190 232 - -
Vium1275g00011 334 MobiDBLite consensus disorder prediction 28 45 - -
Vium1275g00011 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium1275g00011 334 MobiDBLite consensus disorder prediction 21 45 - -
Vium1275g00011 334 Pfam SNARE domain 279 330 IPR000727 -
Vium1275g00011 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1275g00011 Vium-Chr1275 76586 82428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1275g00011 1 334 SNARE and Associated Proteins AT3G24350 62.568 1.01e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1275g00011 K08490 - gmx:100777961 513.842