Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1275g00004 ATGGGTGTGGATTACTATGATGTGTTGAAGGTTAACAGAAATGCTACTGAGGATGATGTGAAGAAATCATACAGAAAGTTGGCCATGAAATGGCACCCTGATAAGAACCCCAACAACAAACAGGAAGCTGAAGCCAATTTCAAACAGATTTCAGAGGCTTACGAGGTGCTGAGTGACCCTCAGAGAAGGTTGGTTTATGATCAGTATGGAGAGGAGGGGTTGAAAGATAAGCCACCGGACGAACCATCAAATGGGTTCAACCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCTGGGCCAGGGAAATCTAAGAGATTCCCCTCTGATGGAGGGACTACAACATTTGGTGGATTTAGTGCAAAGGATAATAATTTTCGATCATATAGTACTGGACGGGGGAATGTGCTAAAGAAGCCACTGCCTGTGGAATCCAAACTGCCTTGCTCTTTGGAGGAATTGTACACTGGCTCTACTAGGAAAATGAAGATCTCAAGGAAGACCGTGGATGCTAACGGATGGACAGTTCCGGAAACAGAGATATTGACCATTGATGTGAAGCCGGGTTGGAAGAAAGGGACAAAGATTACGTTCCCTGAGAAAGGGAATCAAGAACCAAATCAACTGCCAGCAGACCTTGTGTTTGTGATTGACGAGAAGCCTCATGATGTGTTCAAGAGAGACGGGAATGACCTTATTGTGAACAAAAGGGTATCATTGGCGGAGGCCATTGGAGGAACCACAATAAACCTCAACACGCTTGATGGACGAAGTTTAAATGTTCAAGTCACTGACATTGTGAGTCCTGGATACGAGATGAATGTTGCAAAAGAAGGGATGCCAATAACAAAGGAGCCTGGTCATAGGGGTGATCTCAAGATCAAATTTGATGTCAGTTTTCCTACAAAGTTGACCCCAGAGCAACGAGCAGGACTCAAGCGAGCACTCACAAGTTGA 987 0.4448 MGVDYYDVLKVNRNATEDDVKKSYRKLAMKWHPDKNPNNKQEAEANFKQISEAYEVLSDPQRRLVYDQYGEEGLKDKPPDEPSNGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSKRFPSDGGTTTFGGFSAKDNNFRSYSTGRGNVLKKPLPVESKLPCSLEELYTGSTRKMKISRKTVDANGWTVPETEILTIDVKPGWKKGTKITFPEKGNQEPNQLPADLVFVIDEKPHDVFKRDGNDLIVNKRVSLAEAIGGTTINLNTLDGRSLNVQVTDIVSPGYEMNVAKEGMPITKEPGHRGDLKIKFDVSFPTKLTPEQRAGLKRALTS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1275g00004 328 Gene3D - 152 230 - -
Vium1275g00004 328 SMART dnaj_3 3 62 IPR001623 -
Vium1275g00004 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 153 233 IPR008971 GO:0006457|GO:0051082
Vium1275g00004 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 234 320 IPR008971 GO:0006457|GO:0051082
Vium1275g00004 328 CDD DnaJ 4 59 IPR001623 -
Vium1275g00004 328 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vium1275g00004 328 SUPERFAMILY Chaperone J-domain 3 108 IPR036869 -
Vium1275g00004 328 CDD DnaJ_C 153 314 - -
Vium1275g00004 328 Pfam DnaJ domain 4 67 IPR001623 -
Vium1275g00004 328 Gene3D DnaJ domain 3 109 IPR036869 -
Vium1275g00004 328 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vium1275g00004 328 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vium1275g00004 328 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vium1275g00004 328 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vium1275g00004 328 FunFam Dnaj homolog subfamily b member 149 230 - -
Vium1275g00004 328 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 326 - -
Vium1275g00004 328 FunFam DNAJ heat shock family protein 231 326 - -
Vium1275g00004 328 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vium1275g00004 328 Pfam DnaJ C terminal domain 153 311 IPR002939 -
Vium1275g00004 328 Gene3D - 231 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1275g00004 Vium-Chr1275 7520 9999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1275g00004 5 69 C2H2 Transcription Factor Family AT1G74250 40.580 1.12e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1275g00004 K09510 - gmx:100796426 514.227