Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1274g00005 ATGGAAAAGAACAGGAAACTCAGCCGCTTGCAGGATCTTTGTATAGCTTCGCGCCTTGTGGCGGTTTTTTTCTTGTTTCAGAGTTTGGGTTTGTGTTGTTCTTTGAATGAAGAAGGTAATGCTCTTTTGAAGTTCAGGCAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTGGATGATGATTCATCTTTTGACCCTTGTAATTGGTTTGGAGTTGAGTGCTCAGATGGAAGAGTTGTCGCCTTGAATTTGAAGGATCTCTGCCTTGAAGGAACTCTGGCACCTGAGCTTGCGAAACTTATCCACATAAATTCCATTATTTTACGGAACAACTCTTTCTCTGGGACCATCCCCGAAGGATTTGTGGAGTTAAAAGAATTGGAGGTTTTGGATTTGGGATACAACAACTTCAGTGGACATCTACCTGCTGATCTTGGGAGCAATATCTCACTAGCAATCCTCTTGTTGGATAACAATGAATTTCTTGTTGGTTTCTCACCGGAAATTAATGAACTGAGGCTGCTTTCTGAGTGCCAAGTGGGTGAAAATCAGCTAACTAATGCTGCTAAAATGCCAGCGTGTATAGAAAGAGCCACCACATGGCATATTGGTCAAGGTAAAGGTATTACTCGTGGCCTACTGCAACTTCAAAAACCATTTCATCGTACTCATGAAGATCCTCGTAATCGTGCGGCTAATCCACCACAAGAGAAGCCTTCACTTCCTTCTCCTCCTTCACCAGTGCCAAAGCTATCTCCCCCTGAGAAAAGTGCTTCTAATTCTTCTACTCCACATTCTACACCAGGTTCTGGAGCACTACCTAAAACTGAAAAAAGCACTTCACCAAAGGTTCATATTTTGGTTGGAGTTATAGGTGGTGCAGTGTTTCTTCTTTTTTCAACCATTGGCTTATATATTTGTAAAACAAAGGTGGTTAATGTCAGACCTTGGGCCACGGGACTAAGTGGACAGCTGGAGAAGGCATTTGTAACTGGTGCTCAAAAGCTAAGGAGATTGAATCTTGAAGTAGCATGTGAAGATTTTAGTAATGTAATCGGTACTTCACCTATTGGCACAGTGTACAAAGGAACTTTGTCTAGTGGCGTTGAAATTGCTGTAACTTCTGTTCCGGTGACATCATCCAAGAATTGGTCAAAGACTTTAGAAGTTCAATTTAGAAACAAGATAGATACATTATCGAAAGTGAACCACAAGAATTTTGTAAATCTTATTGGATACTGTGAAGAGGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAATGGAACACTATTTGAGCATTTACACATAAAAGAGGCTGAGCACTTGGATTGGGTAACAAGGCTTAGAGTTGCAACGGGTATGGCTTATTGCTTGCAGCATATGCACCAATTGGACCCTCCTATGGCGCTTATCAACCTGAATTCTCAAACTGTTTACTTGACTGATGATTATGCTGCCAAACTCTCAGATTTTAGTTTCTCCTATGAAATAACCTCAGCTGAGACAAAAGCCATTGACATGCCAAAAGCAAGTCTAGAAACTAACGTTTATAGCTTTGGTGCTTTGTTATTTGAGATGGTTACTGGTCGTCTCCCTTATTCAGTGGAACAAAGGGACTCCCTTGAAAACTGGGCATCACACTATTTACAAGGAGACCAACCTCTCAAGGATATGGTGGATCCAATTCTTGAATCTTACCAAGAGGATCAGCTTGAACAAGTTGCTGCATTGATCAAATCTTGTGTGCATCCAGATCCAAAGCAGAGACCAATAATGAAAGATGTCAGTGAGAAGCTAAGAGAGATAACAAAGATAACACCCGAATCAGCAGTTCCAAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTGCTTCTACAGAAGTGCGTTGA 1914 0.4148 MEKNRKLSRLQDLCIASRLVAVFFLFQSLGLCCSLNEEGNALLKFRQRIVSDPFGALSNWVDDDSSFDPCNWFGVECSDGRVVALNLKDLCLEGTLAPELAKLIHINSIILRNNSFSGTIPEGFVELKELEVLDLGYNNFSGHLPADLGSNISLAILLLDNNEFLVGFSPEINELRLLSECQVGENQLTNAAKMPACIERATTWHIGQGKGITRGLLQLQKPFHRTHEDPRNRAANPPQEKPSLPSPPSPVPKLSPPEKSASNSSTPHSTPGSGALPKTEKSTSPKVHILVGVIGGAVFLLFSTIGLYICKTKVVNVRPWATGLSGQLEKAFVTGAQKLRRLNLEVACEDFSNVIGTSPIGTVYKGTLSSGVEIAVTSVPVTSSKNWSKTLEVQFRNKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVTRLRVATGMAYCLQHMHQLDPPMALINLNSQTVYLTDDYAAKLSDFSFSYEITSAETKAIDMPKASLETNVYSFGALLFEMVTGRLPYSVEQRDSLENWASHYLQGDQPLKDMVDPILESYQEDQLEQVAALIKSCVHPDPKQRPIMKDVSEKLREITKITPESAVPKLSPLWWAELEIASTEVR 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1274g00005 637 MobiDBLite consensus disorder prediction 240 255 - -
Vium1274g00005 637 ProSiteProfiles Protein kinase domain profile. 349 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1274g00005 637 SUPERFAMILY Protein kinase-like (PK-like) 337 606 IPR011009 -
Vium1274g00005 637 FunFam Inactive receptor-like serine/threonine-protein kinase 323 431 - -
Vium1274g00005 637 PANTHER PROTEIN MALE DISCOVERER 2 15 635 - -
Vium1274g00005 637 Gene3D Ribonuclease Inhibitor 33 204 IPR032675 -
Vium1274g00005 637 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Vium1274g00005 637 Gene3D Phosphorylase Kinase; domain 1 326 431 - -
Vium1274g00005 637 Pfam Protein tyrosine and serine/threonine kinase 352 606 IPR001245 GO:0004672|GO:0006468
Vium1274g00005 637 Gene3D Transferase(Phosphotransferase) domain 1 432 618 - -
Vium1274g00005 637 MobiDBLite consensus disorder prediction 226 281 - -
Vium1274g00005 637 MobiDBLite consensus disorder prediction 256 280 - -
Vium1274g00005 637 FunFam Nuclear pore complex protein NUP107 35 194 - -
Vium1274g00005 637 SUPERFAMILY L domain-like 37 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1274g00005 Vium-Chr1274 37775 41752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1274g00005 23 606 Receptor kinase-like Gene Family AT5G16000 26.954 1.80e-46 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium1274g00005 PK_Tyr_Ser-Thr 1.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1274g00005 - - gmx:100792450 1011.91