Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1274g00003 ATGAATGATGTTCTATCTGCTATGATGGTCTCCCAAGGCTTGTTACCATCTGGGTCTCTGCTAGATTCTTTGATTCATATATCCAAAGAAGTTGACTCAATGGAAAAGTTTCCCTTCGTACACATAAGAAACGTTTCATCCATGATCAGAAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTAAAGAATCGGGTACTCCACTTCCTCCTTCTTCAGTCCTGTGTCTCACAGAACTGTTCTCTGTGATAAGAAGAGTTAAGGTTTTGATCCAAGACTGCAAAGATGGAAGCTCTCTTTGGAGTCTGATACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTGGTGAAGGAGATGGGAAGGGCCCTTGATATTCTTCCTTTGAGTTTGCTCAATGTAACATCAGATATTAGGGAACAGGTGGAGCTTCTTCACAAGCAAGCAAAGAAGGCTGAGTTATTCATTGATCCTAGAGAGCTTCATCGAAGAGAACAACTTAAACTAGCAATGGCCAACAACAGTTTACAAAAGAAGAAGAACAAAGGGTTTGTTGAGTTTGGAAAAGTGGAAGAAATACTGAGCAGCAATGGTCTGAGAACCCCATCAGATTATGATGGAGAAATATCAAAGTTAAAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTCATCATTGTCTCCAATATAAACAACCTCATATCGTTGGTGTCTTATTCCAAAACCATGATATTCAGAGATGGAGAGAGTAGTAGAAATGAAGAAGATTGTAAGCCACTGTCTTCATTTTTGTATAACAAAGTTCATGATAGTTCTTCATCCTCTCAGTTCATGACACCTAATGTTCCTGATGAATTTCGTTGTCCAATAACACTTGACTTAATGAGGGACCCCGTGATTGTGTCATCTGGGCACACATATGATAGAACATCGATTGGACAATGGATAAACTCTGGTCATCATACATGCCCCAAAAGTGGGCAAAGGTTAATTCACACTGCTTTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCTATGACAACAATGTCCCAGTTAATGATCCTTCAACCGAGGGAAACAACCACAACAAGAAGAACTCGAAGGAGGAGGCCATCGACCATATTTCTGCAAACAAAGCTGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACTGGTTCTGCTGATATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGCATGGTCAACCGGAGTGTCATAGCTGAAGTAGGGGCCATTCCCTTTCTTGTAACACTTCTGGGATCTCAAGATTCAAGAATTCAAGAGCATGCAGTGACAACCTTGTTCAACCTCTCCATATTTGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAGCATAGTAGAAGTGCTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCAGCAATATACAGCTTGTGTATGGTGGATGAGCTGAAAGTGCACATTGGAGGAAGACCAAGGGCAATACCTGCTTTAGTTGGACTCTTGAAAGAAGGCACTTCAATAGGGAAAAAAGATGCTGCGTCTGCACTGTTCAATCTAGCAGTTTACAATCCTAACAAAGTTAGTGCTGTTAAGGCTGGTGCAGTTTCTGTGCTGGTAGAATTGCTGATGGATGACAAGGCTGGCATAACAGATGATGCACTTGCAGTGCTTGCTTCACTCCTCGGTTGCTCTGAGGGATTGGAAGAGATAAGAAATAGTAGAGCATTGGTGCCACTTCTCATTGATCTTCTGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTTGGACTGTGCAAAGAAGAGGGAGAAGTGGTTGCAAGAAGACTCTTGGCAAATCCAAGAAGCATTCCTTCTCTTCAAAGCTTGGCTTCTGATGGATCTTTGAGAGCTAGAAGAAAAGCAGATGCACTGCTCAGACTCCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2052 0.4215 MNDVLSAMMVSQGLLPSGSLLDSLIHISKEVDSMEKFPFVHIRNVSSMIRRIKLLSSLFEEIKESGTPLPPSSVLCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDIREQVELLHKQAKKAELFIDPRELHRREQLKLAMANNSLQKKKNKGFVEFGKVEEILSSNGLRTPSDYDGEISKLKAEAQNQAGTGGLIIVSNINNLISLVSYSKTMIFRDGESSRNEEDCKPLSSFLYNKVHDSSSSSQFMTPNVPDEFRCPITLDLMRDPVIVSSGHTYDRTSIGQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNDPSTEGNNHNKKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTTLFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAAAIYSLCMVDELKVHIGGRPRAIPALVGLLKEGTSIGKKDAASALFNLAVYNPNKVSAVKAGAVSVLVELLMDDKAGITDDALAVLASLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLASDGSLRARRKADALLRLLNRCCSQPHHSV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1274g00003 683 FunFam RING-type E3 ubiquitin transferase 489 676 - -
Vium1274g00003 683 PANTHER U BOX DOMAIN-CONTAINING 44 677 - -
Vium1274g00003 683 Gene3D - 365 513 IPR011989 -
Vium1274g00003 683 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Vium1274g00003 683 CDD RING-Ubox_PUB 284 336 IPR045210 -
Vium1274g00003 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Vium1274g00003 683 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Vium1274g00003 683 FunFam RING-type E3 ubiquitin transferase 282 356 - -
Vium1274g00003 683 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Vium1274g00003 683 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Vium1274g00003 683 Gene3D - 514 672 IPR011989 -
Vium1274g00003 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 559 601 IPR000225 GO:0005515
Vium1274g00003 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Vium1274g00003 683 Pfam Armadillo/beta-catenin-like repeat 426 462 IPR000225 GO:0005515
Vium1274g00003 683 SMART arm_5 464 505 IPR000225 GO:0005515
Vium1274g00003 683 SMART arm_5 423 463 IPR000225 GO:0005515
Vium1274g00003 683 SMART arm_5 382 421 IPR000225 GO:0005515
Vium1274g00003 683 SMART arm_5 589 630 IPR000225 GO:0005515
Vium1274g00003 683 SMART arm_5 548 588 IPR000225 GO:0005515
Vium1274g00003 683 SMART arm_5 507 547 IPR000225 GO:0005515
Vium1274g00003 683 SUPERFAMILY RING/U-box 271 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1274g00003 Vium-Chr1274 26711 28858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1274g00003 18 678 U-box Gene Family AT3G46510 38.024 1.26e-122 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1274g00003 - - gmx:100793498 1137.48