Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1274g00002 ATGAAGGGTTACGAGCCACGTTCCAGTTCCTCTTGTGCTGCCTGCAAGTTCTTGAAGCGAAGATGCATACCCAATTGTATATTTGCACCTTACTTTCGCTCTGATGAGTGCAAGAAATTTGCCAAGGTGCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAGATCCTCATCGAAGTTCCCGAGGAGCAGAGAGAGGACACCGTCAATTCTCTTGCTTATGAAGCAGAAGCCAGGCTCAGAGACCCCATTTATGGATGTATCGGTGCCATAGCTCTTCTCCAGAGGAAGATGGTCGAGCTTCAACACGACCTTGCCATTGCTAAGGATCGTCTCGCTCGTTATGCTGCCGCTGCCACCACTCCTTCCGCCGCCATCGCCACCTCCAACAACTCCTTCAATTCCCATGTCAGTTTGCCACCCTTCCCTGAATTTTTCTCTTGCAACGATTTCAGTGACAACTTCTGCCACAACTCTTCCTCTCAATCTCCGCCATTGACCAGACACGAAATGGTCGATGATTTCATTCAAATCCCTTATATATTATGA 546 0.4835 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPIYGCIGAIALLQRKMVELQHDLAIAKDRLARYAAAATTPSAAIATSNNSFNSHVSLPPFPEFFSCNDFSDNFCHNSSSQSPPLTRHEMVDDFIQIPYIL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1274g00002 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 128 - -
Vium1274g00002 181 Coils Coil 90 117 - -
Vium1274g00002 181 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vium1274g00002 181 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1274g00002 Vium-Chr1274 13348 14206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1274g00002 1 116 AS2 family AT3G11090 75.862 9.40e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium1274g00002 LOB 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1274g00002 - - gmx:100777635 289.271