Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1274g00001 ATGGGAACTTCCGTGCGTGTAAAAGAAGCATCGGTGATTACACCTTCTGAGCCCACTCCACGCTGCGTGCTCGCTCTATCAGCGCTTGATTCGCAACTCTTCCTTCGTTTCACCATAGAGTATCTGTTAGTCTACAAGCCCTCCCCTGGGCTGGACCAGCCTAACACCACGGCCCGTCTAAAATCGGCATTAGCCAAAGCCCTGGTTCCCTACTACCCCTTCGCGGGCAGGGTCAGGCCCAAGCCCGATGGCCCGGGCCTGGAGGTGGTGTGTGCGGCCCAAGGCGCAGTGTTCATAGAAGCCTTCGCTGTCCGTTACAAGGCCAACGACTTTGAAAAAGCGCCTAAAACAGTTGCGCAATGGAGGCCGTTGTTGTCGCTCCACGTGGCAGACGTGCTCAAGGGATCCCCGCCGCTGGTGGTTCAGCTGACCTGGCTCGTCGACGGCGCCGCCGCTATAGCCATCGGGATCAACCACTGCCTCTGCGACGGCATCGGCAGCGCGGAGTTTCTCAACCACTTCGCCGAGCTGGCCAACGAGAGACTCGAGACGAGTTACATGCGCATACAGAAACCGGTTTGGGAGCGTCACCTTCTGAAACCACCGCGCGGGGAGGAGACGCGGGTGGATTCAGCCAGTCATCCCGAGTTTAGCCGAGTCCCGGACCTATGCAGCTTCATGAACAAGGTCTCGACCGGGCTAAAACCAACGTCGATTACGTTCGACAAGACGCGGCTGAACGAGCTAAAGCGAGTGGCGCGGTGCACGAGCGAAGACGGCGAGGCGGCGCGGTACACTTCGTTCGAGGTACTGGCGGCGCACGTGTGGAAAAGCTGGGCGAGAGCGATAGGGTTTCCGGGGGACCAGAAACTGAAGCTGGTGTTCAGTATAAACGTGCGGAACCGTTTGAAGCCGGGTTTGCCCGAGGGGTATTACGGGAACGCGTTTGTTTTGGGGTGTGCGGAGACGAGTGCGAGGGAGTTGGAAGAGAGAGGGGTGGGGTTCGGGTCGGGTTTGGTGAAGCGGGCGAAGGAGAGGGTGGGGAAGGAGCACGTGAGGGAGGTGATGGAGTGGGTCTGGGAGAGGAAAGGGTGCCCCGACCCGGTTGGGGTGTTGATAGTGTCGCAGTGGTCGAGGCTGGGGTTGGAGAATATTGACGTGGGTTTGGGAAAGGCTTGGCACGTGGGACCCGTGTGCTGCGATAGGTACTGTTTGTTCTTGCCGGTGAGAGATGAGTGTGTTAGTGTGAAGGTCATGGTCGCTGTCCCCACTTCCGCCGTTGACAATTACCACCTTTTCATGCGTTCCTCTCACCTCTGA 1320 0.5886 MGTSVRVKEASVITPSEPTPRCVLALSALDSQLFLRFTIEYLLVYKPSPGLDQPNTTARLKSALAKALVPYYPFAGRVRPKPDGPGLEVVCAAQGAVFIEAFAVRYKANDFEKAPKTVAQWRPLLSLHVADVLKGSPPLVVQLTWLVDGAAAIAIGINHCLCDGIGSAEFLNHFAELANERLETSYMRIQKPVWERHLLKPPRGEETRVDSASHPEFSRVPDLCSFMNKVSTGLKPTSITFDKTRLNELKRVARCTSEDGEAARYTSFEVLAAHVWKSWARAIGFPGDQKLKLVFSINVRNRLKPGLPEGYYGNAFVLGCAETSARELEERGVGFGSGLVKRAKERVGKEHVREVMEWVWERKGCPDPVGVLIVSQWSRLGLENIDVGLGKAWHVGPVCCDRYCLFLPVRDECVSVKVMVAVPTSAVDNYHLFMRSSHL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1274g00001 439 Gene3D - 1 218 IPR023213 -
Vium1274g00001 439 Gene3D - 227 431 IPR023213 -
Vium1274g00001 439 PANTHER ACYL TRANSFERASE 4 3 432 - -
Vium1274g00001 439 Pfam Transferase family 4 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1274g00001 Vium-Chr1274 5949 8338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1274g00001 5 434 Monolignol Biosynthesis Gene Families AT5G48930 25.225 1.62e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1274g00001 - - gmx:100817048 754.977