Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12746g00001 ATGGGTCGTCACACGAGACCTCTGAGAAAAAAAAAATCCAAAATGGGGAAACAAAGAAAAGAAGAAAGTGTCAAAAGCCATAATGAATGCCTACATTACTTAGATGAACCGTGTATTCTCGATTTACCCAAACATGGTCTTTCTCCTTTTCTCCACACGCTCTTCTTCTTCTCTCCTCCAAAAACCTTCATATATAACCCCAAACCTCAATATCAAGGGAGTGTTACATTTATCCCAAGACAAGACATGAAGATTCCTTTTTTCACTTGCTTCTCTTCACCCACCAAAGAACAAAACGAAAGCGACTACCCAGAGGAAGAGATCAATGATGGGAGCTTCCGCTTGTTCACTTATGGCGAATTAAAATTGGCCACGCGAAATTTTCATTCCTCGGAGAAGGTTGGAGAAGGTGGCTTTGGCTCTGTCTATAAGGGGAGGCTTCTGGATGGTTCTCTTGTGGCTGTGAAGGTGCTTTCGGTTGAGGTGGAATCCATGCGAGGAGAGAGGGAATTTGTGGCGGAATTGGCTACACTTGCAAACATCAAACACCAAAATCTTGTAAGCTTGAAAGGGTGTTGCGTGGAAGGTGTTCATAGGTATTTGGTGTATGATTATATGGAGAACAACAGCCTCTACAAAACTTTCTTAGGTTCGGAGGAGAGAAGAATGAGATTCAGCTGGGAAACAAGGAGGGAAGTATCTATAGGAGTGGCTCGGGGACTTGACTTTCTCCACGAAGAGCTTAAGCCTCATATCGTACACAGAGACATCAAAGCCAAAAATATTCTTCTTGATCAGAATTTCACCCCAAAGGTTTCGGATTTCGGTTTGGCAAAATTGCTGAGAGACGAAGCTTCTTACATCAGCACTCGTGTTGCAGGGACATTGGGTTATCTAGCTCCAGAATATGCGAATTCCGGACAGGTTTCAAGAAAATCCGATGTTTACAGCTTCGGAGTGTTACTTCTGCAAATGGTGAGTGGCCTAGCAGTGGTGGATGCGTATCAAGACATTGAACGTTTCATAGTGGAGAAGGCGTGGGCAGCTTATCAATCTAACGATCTGTTAAAACTGGTGGATCCCATGTTGAACAAGAATTTTCCCGAGGAGGAGGCCATAAAGTTCTTGAAGGTGGGGCTACTTTGTGTGCAAGAAACAGCGAAGCTTCGGCCACGAATGTCAGAGGTGGTGGAGAAGTTCACCAACAACGTTGATATGAAAGATGTTAAGATTTCGAAACCAGGGTTCGTTGCTGATCTGAGGAACATCAGAATCAGAAACCAAAACTCGTCCCCGGAAACAAGTTCTGCTGGAGCAACCTTCGCAAGCTCCATTTGGAGTTCAGCCAATCTTGCTCGTTAG 1362 0.4427 MGRHTRPLRKKKSKMGKQRKEESVKSHNECLHYLDEPCILDLPKHGLSPFLHTLFFFSPPKTFIYNPKPQYQGSVTFIPRQDMKIPFFTCFSSPTKEQNESDYPEEEINDGSFRLFTYGELKLATRNFHSSEKVGEGGFGSVYKGRLLDGSLVAVKVLSVEVESMRGEREFVAELATLANIKHQNLVSLKGCCVEGVHRYLVYDYMENNSLYKTFLGSEERRMRFSWETRREVSIGVARGLDFLHEELKPHIVHRDIKAKNILLDQNFTPKVSDFGLAKLLRDEASYISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQMVSGLAVVDAYQDIERFIVEKAWAAYQSNDLLKLVDPMLNKNFPEEEAIKFLKVGLLCVQETAKLRPRMSEVVEKFTNNVDMKDVKISKPGFVADLRNIRIRNQNSSPETSSAGATFASSIWSSANLAR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12746g00001 453 ProSitePatterns Protein kinases ATP-binding region signature. 134 156 IPR017441 GO:0005524
Vium12746g00001 453 CDD STKc_IRAK 134 402 - -
Vium12746g00001 453 MobiDBLite consensus disorder prediction 1 23 - -
Vium12746g00001 453 FunFam Serine/threonine-protein kinase receptor 97 205 - -
Vium12746g00001 453 Gene3D Transferase(Phosphotransferase) domain 1 206 414 - -
Vium12746g00001 453 ProSiteProfiles Protein kinase domain profile. 128 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12746g00001 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Vium12746g00001 453 Gene3D Phosphorylase Kinase; domain 1 97 205 - -
Vium12746g00001 453 SUPERFAMILY Protein kinase-like (PK-like) 112 420 IPR011009 -
Vium12746g00001 453 MobiDBLite consensus disorder prediction 1 16 - -
Vium12746g00001 453 SMART serkin_6 128 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12746g00001 453 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 80 444 - -
Vium12746g00001 453 FunFam Putative LRR receptor-like serine/threonine-protein kinase 206 412 - -
Vium12746g00001 453 Pfam Protein kinase domain 128 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12746g00001 Vium-Chr12746 11300 13972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12746g00001 116 439 Receptor kinase-like Gene Family AT1G07650 45.748 2.00e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium12746g00001 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12746g00001 - - gmx:100813945 647.506