Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12743g00001 ATGCAGGACACAGTGCAAAGGTTCTTGCTGTTTCCAATGGATCACTCCTCCATCCTTTTATTGTCCCACCTTCAATTTCAAAACTTGTGGTCATCTTTGATCATTCTTGTAATTTTCTACATAACCTTTCTCAAAGGCCTTGGATTTCACTTGTTGAAGAAATCCAAGAATGAAGAAATACCCTTACCACCTGGTCCCAAACCATGGCCTATCATCGGCAACCTTCCTGAAATGCTTGCAACTAGGCCTACATTCAGGTGGATAAACAACCTAATGAAGGGAATGAAAACTGAGATTGCTTGCATTCGCCTGGGCAATGTTCATGTTATCCCAGTAACTTGTCCCTTCATTGCTCGTGAATTCTTGAGGAAACAAGATGCTACTTTTGCTTCTAGACCCACAAGCATAACCACTTCTCTTATCAGTCGTGGTTATCTCACCACAGCCGTTGTGCCCTTAAGGGAACAATGGAAGAAAATGAGAAGAATTGTTGGCAATGAGCTGTTGTCCACCACCATTCACCACCAGCTTCAACACAAGAGGCTTGAAGAAGCCAACAACCTTGTCTTTTGCATCTACAATAAGTGCAAAAAAAACGTCAACGTTAATGTTGGTCTTGTGAATGTGAGGGATGTCGCGCAACACTATTGCTGCAACGTGATCAAGAATTTGAGCTTTGGTATGAGGTATTTTGGGGAGGGTAAGAGTGATGGAGGGCCTGGTTATGAGGAAGTGGAACATCTTGAAGCCATTTTTGTATTGCTAAAGTACATTTATGATTTCAGTGTTTCTGATTATGTTCCTTGCTTGAGAGGACTTGATTTGGACGGCCACGAGAACAAGGTGAAGAAGGCAATACAAATCGTGGACAAGTATCACGATCCCATCATTGATCAACGAATCAGAGAATGGAATGATGGATCCAAGATTCATAAAGAAGATTTCCTTGATATTCTCATCTCACTCAGAGATGCCAACAATAATCCAGTATTGACAACACAAGAAATCAAGGCACAAATAATGGAATTGATGATGGCTGCTGTGGATAACCCATCAAATGCAGTCGAGTGGGGTCTGGCAGAGATGATAAACCAGCCTGAGTTGCTTCAACACGCAACAGAAGAATTGGACAGGGTAGTTGGAAAAGAAAGATTGGTCCAAGAATCAGACATTCCAAAGCTGAACTACATAAAAGCATGTGCAAGAGAAGCTTTTCGCCTTCATCCCGTTGCACCTTTCAATATTCCTCATGTTTCCGTGAAAGACACCATAGTGGGAAAGTACCTAATCCCGAAAGGGAGCCATGTACTGTTAAGTAGACAGGAAATTGGACGAAACTCAAAAGTTTGGGGTGACGAAGCTCTCAAGTTTAAGCCAGAACGTCATCTTAAGGACAATGTGCTTTTGACAGATCCAGATTTGAATTTTGTATCTTTCAGCACAGGAAGACGTGGCTGTCCTGGAATCATGCTTGGAACAACAATGACTGTGATGCTGTTTGCTAGGTTGCTTCATTCCTTTAGTTGGACTGTGCCGCCCAATGCCTCACGCATCAACCTTGCAGAGAGCCACCACGATATACTTCTGGCTAACCCACTTGTGGCAGTGGTAAAGCCAAGATTAGCACAACAACTTTATACTGTGTGA 1647 0.4268 MQDTVQRFLLFPMDHSSILLLSHLQFQNLWSSLIILVIFYITFLKGLGFHLLKKSKNEEIPLPPGPKPWPIIGNLPEMLATRPTFRWINNLMKGMKTEIACIRLGNVHVIPVTCPFIAREFLRKQDATFASRPTSITTSLISRGYLTTAVVPLREQWKKMRRIVGNELLSTTIHHQLQHKRLEEANNLVFCIYNKCKKNVNVNVGLVNVRDVAQHYCCNVIKNLSFGMRYFGEGKSDGGPGYEEVEHLEAIFVLLKYIYDFSVSDYVPCLRGLDLDGHENKVKKAIQIVDKYHDPIIDQRIREWNDGSKIHKEDFLDILISLRDANNNPVLTTQEIKAQIMELMMAAVDNPSNAVEWGLAEMINQPELLQHATEELDRVVGKERLVQESDIPKLNYIKACAREAFRLHPVAPFNIPHVSVKDTIVGKYLIPKGSHVLLSRQEIGRNSKVWGDEALKFKPERHLKDNVLLTDPDLNFVSFSTGRRGCPGIMLGTTMTVMLFARLLHSFSWTVPPNASRINLAESHHDILLANPLVAVVKPRLAQQLYTV 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12743g00001 548 PRINTS E-class P450 group I signature 486 509 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 PRINTS E-class P450 group I signature 398 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 PRINTS E-class P450 group I signature 476 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 PRINTS E-class P450 group I signature 216 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 PRINTS E-class P450 group I signature 335 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 PRINTS E-class P450 group I signature 355 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 PRINTS E-class P450 group I signature 117 138 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 SUPERFAMILY Cytochrome P450 63 540 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 Gene3D Cytochrome P450 55 546 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 Pfam Cytochrome P450 63 530 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12743g00001 548 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 41 547 - -
Vium12743g00001 548 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 479 488 IPR017972 GO:0005506|GO:0016705
Vium12743g00001 548 FunFam Cytochrome P450 9 55 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12743g00001 Vium-Chr12743 2391 4347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12743g00001 55 546 Cytochrome P450 AT5G05260 54.435 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12743g00001 - K14984 vra:106779949 977.237