Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12733g00004 ATGGGTTTGTTTAGGTTAGCAGTGTTCCTGTTTTTCTGTCTGGACACTGTTCATTCTACAGTTCTTGGGAAAGAAAATGCTGGCATCGTGAATGGAAAAAAATCACTTATTTCATTCATGTCAGGCATTGTTTCAGACCCTCAAAACGCTCTGGATAGTTGGAAGTCACCCGGTGTTCATGTTTGTGATTGGTCGGGTGTGAGATGTAACAATGCAAGTGACATGATCGTAGAGGTTGATCTCAGTGGAAGGTCTCTAGGAGGCACTATTTCCCCTGCCCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGGTCGGATTCCAAAAGAAATAGGCCATTTGGTTCGACTTAGACAACTCAGTTTGTCTGGGAATTTTCTTGAAGATCACATTCCATCCGAGTTTGGTTCACTTCACAACTTGGACTACCTTAACTTAGGAAGCAATCATCTTGAGGGAGAGATCCCTTCTTCACTCTTCTGCAATAGGACTTCACTGGGTTATGTAGACCTATCTAACAATTCCTTAGGTGGCCAAATCCCCTTGAACAAAGGGTGCATCCTTAAAGAACTCAAGTTCCTATTACTTTGGTCTAACAAGCTTGTAGGAAAAGTTCCTTTAGCTCTTTCAAACTCTACCAAGCTAAAATGGCTTGATTTGGGGTTGAATATGTTGAGTGGAGAGCTTCCTTCTGAGATTGTAAGTAATTGGCCACAACTACAATTCCTCTACTTGTCGTACAATAATTTTACTAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCCTCCTTGGTGAATTTATCGAACTTTCAAGAACTTGAATTGGCGGGAAATAATCTTGGTGGAAAGCTGCCTCACAGTATTGGTGATCTTCCTACCAGCCTGCAACAACTCCACCTAGAAAAGAATCTCATATATGGCTCTATACCTCCTCATATTTCCAACCTTGTCAACCTGAATTTCTTGAAGTTGTCTAGTAACCTAATAAATGGATCAATCCCTCCCAGCCTCGGCCATATGAATAGGCTAGAAAGAATTTACTTATCAAACAATTCACTATCTGGTGAGATTCCTTCAACCCTTGGTGGCATTCAGCATCTGGGACTTCTAGACTTGTCAAGAAACAAGCTTTCTGGCCCAATACCAGACAGTTTTGCAAATCTACCCCAGTTAAGAAGGCTTTTACTTTATGACAACCAACTTTCTGGAACAATCCCACCAAGTCTGGCAAAATGTGTAAATTTGGAGATTTTAGACTTATCTCACAACAATATAACTGGGTTGATTCCTGCAGAAGTTGCAGCCTTGAGTAGCTTGAAACTATACCTGAATTTATCAAACAATAACTTGCATGGGTCTATTCCATTAAAGCTCAGCAAAATGGACATGGTTCTAGCTATTGATTTATCCATGAATAACCTCTCTGGCAGCATACCACCACAGCTGGAAAGTTGCATAGCACTGGAGTACCTCAACCTCTCTGGTAACTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCTTTATATTAGAGCACTTGATGTGTCTTCAAATCAGTTGACTGGGGCAATACCACAGTCCGTGCAGTTGTCTCCCTCTCTGAAGGAACTTAATTTCTCTTTCAACAGATTCTCAGGGAAAGTGTCAAACAAGGGAGCATTTTCAAATCTTACCATAGACTCTTTCCTGGGAAACGGTGGTCTCTGCGGCCCGTTCAAAGGCATGCAACAATGTCACAAGAAATGTAGTTATCATTTGGTGTTCTTGTTAATTCCTGTGTCACTATTTGGCACCCCTTTCCTATGCATACTTTTTAGGTACCCAATAGTAATGAAGTCAAGAGTGAAAAAACGATTTGCAACTGTTAGCAGAGGTGATTTTGAGGATGTAGAAGAAGGAGCAAAAGAGGTCAAGTATCCAAGAATCACATATGAACAACTTAAAGAAGCCACCGGAGGCTTCGGTGCTACAAGCTTAATTGGTTCAGGCCGGTTTGGGCAGGTCTACGAAGGAATGCTCCAAGATAATACAAGAGTAGCTGTGAAGGTGTTGGACACAACACAAGGTGAGATTTCAAGGAGTTTTAGAAGGGAATGTCAAATACTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATAACAATCTGTTGTAGGCCAGAATTTAATGCTCTTGTTTTTCCCTTGATGCCAAATGGTAGTCTCGAGAGTCACCTATATCCAAGCCAAGGACTGAATGTGGTTCAACTAGTAAGAATCTGCAGTGATGTAGCCGAGGGAATGGCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTTAAGCCTAGCAATATACTCCTTGATGAAGATATGACAGCTTTGGTCACTGATTTTGGAATTTCAAGGCTTGTACAAAGTGATGAGAACACATCCACCAACACCTCATCTTTCAGTTCAACACATGCTTTGCTATGTGGGACGGTCGGTTACATAGCTCCCGAGTACGGAATGGGAAAAGATGCTTCAAGTGAGGGTGATGTTTACAGTTTTGGGGTGCTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGAAGTGCTCAGCCATGAAGGCTCAAGCTTGAGTGAATGGCTTAAGAAACTATACACACAACCACACCACCTTCAAAGCTTTGTTCAACAAACACTTCAAAGGTGCTATCCTTTTGGTCTGCCAAATCCTCACAACAAAGTGTGGAAAGATGTTATTCTGGAACTCATTGAGCTGGGGCTGATTTGCACTCAGCACAACCCTTCAACAAGACCAAGCATGCACGACATAGCACAAGAGATGGAGAGGTTAAAGGACTACCTCACCAAGTCGACCTTCACACGTCATTCAAGTCAATCCCAACATTAA 2922 0.4199 MGLFRLAVFLFFCLDTVHSTVLGKENAGIVNGKKSLISFMSGIVSDPQNALDSWKSPGVHVCDWSGVRCNNASDMIVEVDLSGRSLGGTISPALANISSLQILDLSGNFLVGRIPKEIGHLVRLRQLSLSGNFLEDHIPSEFGSLHNLDYLNLGSNHLEGEIPSSLFCNRTSLGYVDLSNNSLGGQIPLNKGCILKELKFLLLWSNKLVGKVPLALSNSTKLKWLDLGLNMLSGELPSEIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSNFQELELAGNNLGGKLPHSIGDLPTSLQQLHLEKNLIYGSIPPHISNLVNLNFLKLSSNLINGSIPPSLGHMNRLERIYLSNNSLSGEIPSTLGGIQHLGLLDLSRNKLSGPIPDSFANLPQLRRLLLYDNQLSGTIPPSLAKCVNLEILDLSHNNITGLIPAEVAALSSLKLYLNLSNNNLHGSIPLKLSKMDMVLAIDLSMNNLSGSIPPQLESCIALEYLNLSGNSFEGPLPYSLGQLLYIRALDVSSNQLTGAIPQSVQLSPSLKELNFSFNRFSGKVSNKGAFSNLTIDSFLGNGGLCGPFKGMQQCHKKCSYHLVFLLIPVSLFGTPFLCILFRYPIVMKSRVKKRFATVSRGDFEDVEEGAKEVKYPRITYEQLKEATGGFGATSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTQGEISRSFRRECQILKKIRHRNLIRIITICCRPEFNALVFPLMPNGSLESHLYPSQGLNVVQLVRICSDVAEGMAYLHHYSPVKVVHCDLKPSNILLDEDMTALVTDFGISRLVQSDENTSTNTSSFSSTHALLCGTVGYIAPEYGMGKDASSEGDVYSFGVLVLEMVSGRRPTEVLSHEGSSLSEWLKKLYTQPHHLQSFVQQTLQRCYPFGLPNPHNKVWKDVILELIELGLICTQHNPSTRPSMHDIAQEMERLKDYLTKSTFTRHSSQSQH 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12733g00004 973 Gene3D Ribonuclease Inhibitor 31 194 IPR032675 -
Vium12733g00004 973 Pfam Protein kinase domain 669 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12733g00004 973 SUPERFAMILY L domain-like 330 581 - -
Vium12733g00004 973 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 270 366 - -
Vium12733g00004 973 SUPERFAMILY L domain-like 41 260 - -
Vium12733g00004 973 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 741 965 - -
Vium12733g00004 973 ProSiteProfiles Leucine-rich repeat profile. 423 444 IPR001611 GO:0005515
Vium12733g00004 973 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 371 593 - -
Vium12733g00004 973 Gene3D Ribonuclease Inhibitor 195 592 IPR032675 -
Vium12733g00004 973 SMART LRR_typ_2 445 470 IPR003591 -
Vium12733g00004 973 SMART LRR_typ_2 422 444 IPR003591 -
Vium12733g00004 973 SMART LRR_typ_2 276 300 IPR003591 -
Vium12733g00004 973 SMART LRR_typ_2 97 120 IPR003591 -
Vium12733g00004 973 SMART LRR_typ_2 325 349 IPR003591 -
Vium12733g00004 973 SMART LRR_typ_2 397 421 IPR003591 -
Vium12733g00004 973 SMART LRR_typ_2 145 169 IPR003591 -
Vium12733g00004 973 SMART LRR_typ_2 373 396 IPR003591 -
Vium12733g00004 973 SMART LRR_typ_2 121 144 IPR003591 -
Vium12733g00004 973 Pfam Leucine rich repeat 351 410 IPR001611 GO:0005515
Vium12733g00004 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Vium12733g00004 973 Gene3D Transferase(Phosphotransferase) domain 1 741 971 - -
Vium12733g00004 973 ProSiteProfiles Protein kinase domain profile. 665 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12733g00004 973 SUPERFAMILY Protein kinase-like (PK-like) 647 952 IPR011009 -
Vium12733g00004 973 SMART serkin_6 665 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12733g00004 973 Gene3D Phosphorylase Kinase; domain 1 644 739 - -
Vium12733g00004 973 SUPERFAMILY L domain-like 269 362 - -
Vium12733g00004 973 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515
Vium12733g00004 973 Pfam Leucine Rich Repeat 423 441 IPR001611 GO:0005515
Vium12733g00004 973 Pfam Leucine Rich Repeat 497 516 IPR001611 GO:0005515
Vium12733g00004 973 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Vium12733g00004 973 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 403 951 - -
Vium12733g00004 973 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Vium12733g00004 973 CDD STKc_IRAK 671 955 - -
Vium12733g00004 973 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 68 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12733g00004 Vium-Chr12733 33770 37010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12733g00004 33 965 Receptor kinase-like Gene Family AT3G47570 33.754 3.42e-157 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium12733g00004 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12733g00004 - - gmx:100792446 1643.25