Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1272g00007 ATGAAGTCTGCGCAGGTCAAAGAAGCGATTCTCTTTACTCTCCTGACGTGCGTCTTCGCCATTGCAGATTCGGATCTAGCTTCGGACAGAGCCGGGCTAGTGTCACTCCGAAGCGCGTTGGGGGGACGCACGCTGCTATGGAACACCAGCCAAACAAACCCTTGCGGGTGGACCGGCGTCACCTGCACCAACGACAGAGTAACCTTACTGCGCCTACCAGCGATGGGTCTCTCCGGTTCTCTCCCCTCCGGTTTGGGAAACCTCACCGAACTGCAGACGCTCTCCCTCCGCTTCAACGCTCTAACCGGACCAATCCCCGCGGATTTCGTCAACCTTAAAGCGCTGCGAAACCTCTATCTCCAAGGAAACTTCTTCTCCGGCGAAGTTCCCGATGCGGTATTCTCGTTGCAGAACCTCGTGAGGTTGAATTTAGGTAACAACAATTTCAGCGGCGAGATTTCTCCCAAGTTCAATGGTCTCACTCGTTTGTCCACTCTCTATCTCGAACGCAACAATTTTACTGGTTCAATCCCTGACCTTACTGTTCCGCCTCTGGATCAGTTCAACGTCTCGTTTAATTCCCTTACGGGTCCCATTCCGAACCGGTTTTCGAGTCTGGACCAAACCGCTTTTCTCGGGAACTCACTCTGCGGGAAGCCCTTGCAAAGCTGCCCCGGAACCGAGGAGGGAAAGAGTAAATTGTCCGGTGGTGCCATTGCGGGTATTGTGATAGGTTCCGTGGTTGGTTTGCTGTTGATTCTGCTGCTTTTGTTCTTTTTGTGTAGAAAAAGGAGTGAGAAAAACGATGAAAGTGTGTCAACAGGGAAGCGTGATGTGGGAGGTGAAGTGTCTCGTGAAAAGAGTGCTGAGAGTGGGAATTCTGGTTCGGCGGTGGCAGGTTCGGTGGAGAAGAGTGATGTTCAAAGCAGTGGTGGTGGAGATAAGAGTCTGGTGTTTTTTGGGAATGTGAATAGGGTGTTTAGTTTGGATGAGTTGTTGAGGGCTTCTGCGGAAGTGTTGGGAAAAGGAACGTTTGGAACGACTTACAAGGCGACTTTGGAAATGGGGGTGAGTGTGGCGGTGAAGAGGTTGAAGGATGTCACAGCCGCAGAGAGGGAATTCAGGGAGAAGATCGAGCAAGTGGGGAAGATGGTTCATCACAACTTGGTCCCACTAAGGGGTTATTACTTTAGCAGGGATGAGAAGCTTGTTGTCTATGATTACATGCCTATGGGAAGCTTATCTGCTCTCTTGCATGCAAATGGTGGGGTGGGGAGGACTCCACTGAATTGGGAAACAAGGTCTGCCATTGCTCTTGGTGCTGCTCGTGGGATTGCATACATTCATTCTCATGGCTCAACATCCTCTCATGGGAACATCAAGGCATCGAATATCCTTCTGACGAAATCTTTTGAAGCTCGTGTCTCTGACTTTGGCCTTGCTTACCTTGCTCTTCCAACCTCTACGCCAAACCGTGTTTCTGGTTACAGAGCACCAGAGATCACTGATGCGCGAAAAGTATCCCAAAAAGCTGATGTCTATAGCTTTGGCATCATGCTTCTGGAGCTGCTTACAGGGAAGGCTCCTGCTCATTCTTCACTGAATGACGAAGGGGTGGACCTCCCAAGATGGGTTCAATCTGTGGTTGAAGGTGAGTGGAACACTGATGTATTTGACATGGAGCTTCTGAGGTACCAGAGTGTTGAGGAGGAAATGGTGAAGCTCTTGCAGCTTGCCCTTGAATGCACTGCACAATATCCTGACAAGAGACCTTCAATGGACGTGGTAGCAAGCAAGATCGAAGAAATTTGCCATTCTAGTTTAGAGAAAGAGGAAGGGAAGAATCATGATTTTAAAGATCCTGATAATGGATTTTCGCAACAATACTACTCTGTTGACTCGGGTGTGTCACAAGCTTGA 1920 0.4953 MKSAQVKEAILFTLLTCVFAIADSDLASDRAGLVSLRSALGGRTLLWNTSQTNPCGWTGVTCTNDRVTLLRLPAMGLSGSLPSGLGNLTELQTLSLRFNALTGPIPADFVNLKALRNLYLQGNFFSGEVPDAVFSLQNLVRLNLGNNNFSGEISPKFNGLTRLSTLYLERNNFTGSIPDLTVPPLDQFNVSFNSLTGPIPNRFSSLDQTAFLGNSLCGKPLQSCPGTEEGKSKLSGGAIAGIVIGSVVGLLLILLLLFFLCRKRSEKNDESVSTGKRDVGGEVSREKSAESGNSGSAVAGSVEKSDVQSSGGGDKSLVFFGNVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGVSVAVKRLKDVTAAEREFREKIEQVGKMVHHNLVPLRGYYFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRSAIALGAARGIAYIHSHGSTSSHGNIKASNILLTKSFEARVSDFGLAYLALPTSTPNRVSGYRAPEITDARKVSQKADVYSFGIMLLELLTGKAPAHSSLNDEGVDLPRWVQSVVEGEWNTDVFDMELLRYQSVEEEMVKLLQLALECTAQYPDKRPSMDVVASKIEEICHSSLEKEEGKNHDFKDPDNGFSQQYYSVDSGVSQA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1272g00007 639 FunFam Probable inactive receptor kinase At1g48480 409 611 - -
Vium1272g00007 639 CDD STKc_IRAK 340 603 - -
Vium1272g00007 639 Pfam Protein kinase domain 337 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1272g00007 639 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Vium1272g00007 639 FunFam Probable inactive receptor kinase RLK902 26 181 - -
Vium1272g00007 639 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Vium1272g00007 639 MobiDBLite consensus disorder prediction 287 311 - -
Vium1272g00007 639 MobiDBLite consensus disorder prediction 270 311 - -
Vium1272g00007 639 MobiDBLite consensus disorder prediction 609 639 - -
Vium1272g00007 639 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Vium1272g00007 639 PANTHER OS05G0588300 PROTEIN 11 607 - -
Vium1272g00007 639 SUPERFAMILY L domain-like 47 212 - -
Vium1272g00007 639 MobiDBLite consensus disorder prediction 270 285 - -
Vium1272g00007 639 Gene3D Phosphorylase Kinase; domain 1 305 408 - -
Vium1272g00007 639 FunFam pollen receptor-like kinase 1 303 408 - -
Vium1272g00007 639 Gene3D Ribonuclease Inhibitor 28 181 IPR032675 -
Vium1272g00007 639 Gene3D Transferase(Phosphotransferase) domain 1 409 626 - -
Vium1272g00007 639 SUPERFAMILY Protein kinase-like (PK-like) 338 598 IPR011009 -
Vium1272g00007 639 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1272g00007 639 MobiDBLite consensus disorder prediction 622 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1272g00007 Vium-Chr1272 57678 61512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1272g00007 25 603 Receptor kinase-like Gene Family AT1G48480 57.492 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium1272g00007 Pkinase 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1272g00007 - - gmx:100801103 1025.39