Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1272g00004 ATGAAGTCTGCGCAGGTCAAAGAAGCGATTCTCTTTACTCTCCTGACGTGCGTCTTCGCCATTGCAGATTCGGATCTAGCTTCGGACAGAGCCGGGCTAGTGTCACTCCGAAGCGCGTTGGGGGGACGCACGCTGCTATGGAACACCAGCCAAACAAACCCTTGCGGGTGGACCGGCGTCACCTGCACCAACGACAGAGTAACCTTACTGCGCCTACCAGCGATGGGTCTCTCCGGTTCTCTCCCCTCCGGTTTGGGAAACCTCACCGAACTGCAGACGCTCTCCCTCCGCTTCAACGCTCTAACCGGACCAATCCCCGCGGATTTCGTCAACCTTAAAGCGCTGCGAAACCTCTATCTCCAAGGAAACTTCTTCTCCGGCGAAGTTCCCGATGCGGTATTCTCGTTGCAGAACCTCGTGAGGTTGAATTTAGGTAACAACAATTTCAGCGGCGAGATTTCTCCCAAGTTCAATGGTCTCACTCGTTTGTCCACTCTCTATCTCGAACGCAACAATTTTACTGGTTCAATCCCTGACCTTACTGTTCCGCCTCTTGATCAGTTCAACGTCTCGTTTAATTCCCTTACGGGTCCCATTCCGAACCGGTTTTCGAGTCTGGACCAAACCGCTTTTCTCGGGAACTCACTCTGCGGGAAGCCCTTGCAAAGCTGCCCCGGAACCGAGGAGGGAAAGAGTAAATTGTCCGGTGGTGCCATTGCGGGTATTGTGATAGGTTCCGAGGGAAAGAGTAAATTGTCCGGTGGTGCCATTGCGGGTATTGTGATAGGTTCCGTGGTTGGTTTGCTGTTGATTCTGCTGCTTTTGTTCTTTTTGTGTAGAAAAAGGAGTGAGAAAAACGATGAAAGTGTGTCAACAGGGAAGCGTGATGTGGGAGGTGAAGTGTCTCGTGAAAAGAGTGCTGAGAGTGGGAATTCTGGTTCGGCGGTGGCAGGTTCGGTGGAGAAGAGTGATGTTCAAAGCAGTGGTGGTGGAGATAAGAGTCTGGTGTTTTTTGGGAATGTGAATAGGGTGTTTAGTTTGGATGAGTTGTTGAGGGCTTCTGCGGAAGTGTTGGGAAAAGGAACGTTTGGAACGACTTACAAGGCGACTTTGGAAATGGGGGTGAGTGTGGCGGTGAAGAGGTTGAAGGATGTCACAGCCGCAGAGAGGGAATTCAGGGAGAAGATCGAGCAAGTGGGGAAGATGGTTCATCACAACTTGGTCCCACTAAGGGGTTATTACTTTAGCAGGGATGAGAAGCTTGTTGTCTATGATTACATGCCTATGGGAAGCTTATCTGCTCTCTTGCATGCAAATGGTGGGGTGGGGAGGACTCCACTGAATTGGGAAACAAGGTCTGCCATTGCTCTTGGTGCTGCTCGTGGGATTGCATACATTCATTCTCATGGCTCAACATCCTCTCATGGGAACATCAAGGCATCGAATATCCTTCTGACGAAATCTTTTGAAGCTCGTGTCTCTGACTTTGGCCTTGCTTACCTTGCTCTTCCAACCTCTACGCCAAACCGTGTTTCTGGTTACAGAGCACCAGAGATCACTGATGCGCGAAAAGTATCCCAAAAAGCTGATGTCTATAGCTTTGGCATCATGCTTCTGGAGCTGCTTACAGGGAAGGCTCCTGCTCATTCTTCACTGAATGACGAAGGGGTGGACCTCCCAAGATGGGTTCAATCTGTGGTTGAAGGTGAGTGGAACACTGATGTATTTGACATGGAGCTTCTGAGGTACCAGAGTGTTGAGGAGGAAATGGTGAAGCTCTTGCAGCTTGCCCTTGAATGCACTGCACAATATCCTGACAAGAGACCTTCAATGGACGTGGTAGCAAGCAAGATCGAAGAAATTTGCCATTCTAGTTTAGAGAAAGAGGAAGGGAAGAATCATGATTTTAAAGATCCTGATAATGGATTTTCGCAACAATACTACTCTGTTGACTCGGGTGTGTCACAAGCTTGA 1974 0.4949 MKSAQVKEAILFTLLTCVFAIADSDLASDRAGLVSLRSALGGRTLLWNTSQTNPCGWTGVTCTNDRVTLLRLPAMGLSGSLPSGLGNLTELQTLSLRFNALTGPIPADFVNLKALRNLYLQGNFFSGEVPDAVFSLQNLVRLNLGNNNFSGEISPKFNGLTRLSTLYLERNNFTGSIPDLTVPPLDQFNVSFNSLTGPIPNRFSSLDQTAFLGNSLCGKPLQSCPGTEEGKSKLSGGAIAGIVIGSEGKSKLSGGAIAGIVIGSVVGLLLILLLLFFLCRKRSEKNDESVSTGKRDVGGEVSREKSAESGNSGSAVAGSVEKSDVQSSGGGDKSLVFFGNVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGVSVAVKRLKDVTAAEREFREKIEQVGKMVHHNLVPLRGYYFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRSAIALGAARGIAYIHSHGSTSSHGNIKASNILLTKSFEARVSDFGLAYLALPTSTPNRVSGYRAPEITDARKVSQKADVYSFGIMLLELLTGKAPAHSSLNDEGVDLPRWVQSVVEGEWNTDVFDMELLRYQSVEEEMVKLLQLALECTAQYPDKRPSMDVVASKIEEICHSSLEKEEGKNHDFKDPDNGFSQQYYSVDSGVSQA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1272g00004 657 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Vium1272g00004 657 Gene3D Transferase(Phosphotransferase) domain 1 427 644 - -
Vium1272g00004 657 MobiDBLite consensus disorder prediction 288 303 - -
Vium1272g00004 657 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Vium1272g00004 657 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Vium1272g00004 657 PANTHER OS05G0588300 PROTEIN 11 625 - -
Vium1272g00004 657 SUPERFAMILY Protein kinase-like (PK-like) 356 616 IPR011009 -
Vium1272g00004 657 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Vium1272g00004 657 CDD STKc_IRAK 358 621 - -
Vium1272g00004 657 Gene3D Phosphorylase Kinase; domain 1 323 426 - -
Vium1272g00004 657 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1272g00004 657 FunFam Probable inactive receptor kinase RLK902 26 181 - -
Vium1272g00004 657 MobiDBLite consensus disorder prediction 628 657 - -
Vium1272g00004 657 MobiDBLite consensus disorder prediction 640 657 - -
Vium1272g00004 657 MobiDBLite consensus disorder prediction 305 329 - -
Vium1272g00004 657 Pfam Protein kinase domain 355 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1272g00004 657 MobiDBLite consensus disorder prediction 288 329 - -
Vium1272g00004 657 FunFam Probable inactive receptor kinase At1g48480 427 629 - -
Vium1272g00004 657 FunFam pollen receptor-like kinase 1 321 426 - -
Vium1272g00004 657 SUPERFAMILY L domain-like 47 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1272g00004 Vium-Chr1272 57678 61520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1272g00004 25 621 Receptor kinase-like Gene Family AT1G48480 58.143 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium1272g00004 Pkinase 1.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1272g00004 - - gmx:100801103 1035.4