Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12725g00001 ATGGATTGTTCAGCTGCAAGAAAGACTCAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAGCAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAAGTGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTGGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATTGACAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATATTTCCATGGACTGCAATGGATCATTCAGTTGTCATGGCTCCACCATCATATCCCTTTCCAATGCCAGTGGCAGTACCTCCTGGTTCAATCCCCATGCAGCCATTCCCCTACTTTACTAATCAACATCCTGCAGTCATCTCTAATCCCCATTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACCCAGTACGTTTCACCTCCACTTCATCCAGGCTGTCGGTCCAATGTGTCTGAAAAACCAGAGTCCAAAAGCAAATCATCCAGGGAGAGCAAGGCTGAAAAGAACGAGGATTCTAATGATGTCACTACAGACCTTCAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGATTTATCATCCGGACAAAGGAAATCTGGGAAGTTGTCAAGAAGGGAAAGCAGCTGCTGCTCGGAAGGGAATACATTAGGTAGGTGTTCTTCTTCTCATAGCGCTCAGGATAGCTCATCAAGCAGTGCAGTTGCAAGCAGAAAGGATAATGAATGA 852 0.4331 MDCSAARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILSDTIQLLKDLTSQVGKLKEEYATLNEESRELTQEKNDLREEKASLKSDIDNLNNQYQQQLRTIFPWTAMDHSVVMAPPSYPFPMPVAVPPGSIPMQPFPYFTNQHPAVISNPHSTFVPYLAPNTIVEQQSTQYVSPPLHPGCRSNVSEKPESKSKSSRESKAEKNEDSNDVTTDLQLKTPGSSADQDLSSGQRKSGKLSRRESSCCSEGNTLGRCSSSHSAQDSSSSSAVASRKDNE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12725g00001 283 MobiDBLite consensus disorder prediction 192 217 - -
Vium12725g00001 283 PANTHER TRANSCRIPTION FACTOR BHLH121 2 280 IPR044579 GO:0003700|GO:0006879
Vium12725g00001 283 MobiDBLite consensus disorder prediction 218 239 - -
Vium12725g00001 283 Coils Coil 5 25 - -
Vium12725g00001 283 MobiDBLite consensus disorder prediction 248 283 - -
Vium12725g00001 283 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Vium12725g00001 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Vium12725g00001 283 SMART finulus 12 62 IPR011598 GO:0046983
Vium12725g00001 283 Gene3D - 5 87 IPR036638 GO:0046983
Vium12725g00001 283 MobiDBLite consensus disorder prediction 179 283 - -
Vium12725g00001 283 CDD bHLH_AtILR3_like 11 85 - -
Vium12725g00001 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Vium12725g00001 283 Coils Coil 46 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12725g00001 Vium-Chr12725 3131 7159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12725g00001 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 65.690 2.53e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium12725g00001 HLH 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12725g00001 - - gmx:100804250 471.855