Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12705g00001 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGAGGGTCTGCAGATGCAGTGGTGGCAGCAGGAGGGGGTGCTGTTCATGACGGTGCTGTTGACGTGGCAGGGGGTGGCGGCGGCGGTGGCGGAGGATCAAATTCAGGGGATGATGAGAGGGGGAGAGTGGAGGAAGGTGACAGGAGCTTTGGTGGGAACAGGTGGCCGAGACAAGAGACTCTGGCTTTGTTGAAGATACGGTCGGATATGGACGTGGCTTTCAGAGATGCAAGTGTGAAGGGTCCTTTGTGGGAAGAGGTTTCAAGGAAGCTGGCAGATCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGCCGCAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCATCCTATCCAATCCCCAACACCACCACCTTCCAAGCCACCACCAGTAACAACAACAGCACTACCAGCAACACCACTGTCAATAGTTGTAACAACCACACCCTCTTCAATAATGTCTCTTCCCTCGACCACAACGCTGCCATTGTCACCTGCCACTGTTCCATCACCAACAACACTCCCTGTGCCTCAAGGCATTCTCGCCCTCACAACCTCTTCCTTCCCATCATCAAACCCTACACCATACTTCCCAACACAAACACCAAACCCTACAACCAACAACACCAACAGCAAGAACCCTCAAAACACCATCGCCCCACCTTCTTTCCCCAACATTCCGACTGATCTCTTGTCCAATTCCAGCTCTTCCTCCACCTCTTCGGAGGAAACAACCACGGAGGGAGGGGGAGCAAGACGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTGATAGAGAAACAGGAGGAGCTGCAAAGGAGGTTCCTGGAGGCCATTGAGAAGAGAGAACAAGAGCGTGTCGCGAGAGAAGAAACGTGGAGAAGGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTTGCACAGGAAAGATCCATTGCTGCCGCTAAAGACGCTGCTGTTATGGCATTTTTGCAGAAGATGGCCGAACATCAACAAGAGGAAAATAATCTTCAACCAGCATTGAATACCAACAACAATAACATTATCTCTATTGCTGCACAGCAACCGGTGCCACAGGCAACTCCAACACCAACACCACAGCAAAAACAAACAACAACTGTTCCCGAGGCCCCACCAGTGCAGTCCTTGGTCCCACAGCCACAGCAACATCAGGTGCAGCAACAACAACAACTAGTGATGACTAATGTGGAAACCAATAAAGCTGATAATAACGGTGAGAATTTGATGATGGGAGCGAGTTCTTCGCGGTGGCCAAAAGTGGAGGTACAAGCGCTGATAGATCTGAGAACAAACCTGGAAACAAAGTACCAGGAAAATGGACCAAAAGGTCCTCTATGGGAGGAGATCTCAGCTTTGATGAGAAAAATGGGGTACAACCGGAACGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAAAGCAACAAGAAGAGGCCAGAAGATTCCAAGACCTGTCCCTATTTTCACCAGTTGGAGGCTCTATACAAGGAGAAGAACAAGGTGGAGGGCCAAATGAAGCCGGAGAGCATGATGGCACCCCTCATGGTGCAGCCGGAGCAACAGTGGCCTCCTCAGCAGGTGGTGCCCCCAGAAGTAACCATGGAAGACGCCCAGAATGACCCCATGGACGGGGGGCACCACGAGGATGGTGAGGAGGAGGAGGAAGAGGAGGACAAGGACATC 1881 0.5061 MLGDSAVLGTGGGGGSADAVVAAGGGAVHDGAVDVAGGGGGGGGGSNSGDDERGRVEEGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALENNPAIHPIQSPTPPPSKPPPVTTTALPATPLSIVVTTTPSSIMSLPSTTTLPLSPATVPSPTTLPVPQGILALTTSSFPSSNPTPYFPTQTPNPTTNNTNSKNPQNTIAPPSFPNIPTDLLSNSSSSSTSSEETTTEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVAREETWRRQEMQRINREREILAQERSIAAAKDAAVMAFLQKMAEHQQEENNLQPALNTNNNNIISIAAQQPVPQATPTPTPQQKQTTTVPEAPPVQSLVPQPQQHQVQQQQQLVMTNVETNKADNNGENLMMGASSSRWPKVEVQALIDLRTNLETKYQENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKVEGQMKPESMMAPLMVQPEQQWPPQQVVPPEVTMEDAQNDPMDGGHHEDGEEEEEEEDKDI 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12705g00001 627 FunFam Trihelix transcription factor GT-2 68 129 - -
Vium12705g00001 627 PANTHER FI21293P1 41 606 - -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 226 299 - -
Vium12705g00001 627 ProSiteProfiles Myb-like domain profile. 473 531 IPR001005 -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 582 627 - -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 244 289 - -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 157 178 - -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 160 178 - -
Vium12705g00001 627 CDD GT1 66 131 - -
Vium12705g00001 627 SMART sant 64 126 IPR001005 -
Vium12705g00001 627 SMART sant 471 533 IPR001005 -
Vium12705g00001 627 FunFam Trihelix transcription factor GT-2 475 536 - -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 408 441 - -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 50 65 - -
Vium12705g00001 627 Coils Coil 303 334 - -
Vium12705g00001 627 CDD GT1 473 538 - -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 613 627 - -
Vium12705g00001 627 Pfam Myb/SANT-like DNA-binding domain 473 560 IPR044822 -
Vium12705g00001 627 Pfam Myb/SANT-like DNA-binding domain 66 152 IPR044822 -
Vium12705g00001 627 ProSiteProfiles Myb-like domain profile. 66 124 IPR001005 -
Vium12705g00001 627 Gene3D - 68 129 - -
Vium12705g00001 627 Gene3D - 475 536 - -
Vium12705g00001 627 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12705g00001 Vium-Chr12705 13335 16343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12705g00001 64 587 Trihelix Transcription Factor Family AT1G76890 47.970 1.17e-144 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium12705g00001 Myb_DNA-bind_4 4.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12705g00001 - - gmx:100804788 693.73