Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12697g00001 ATGTCTACCTCTGCAACTTCTCTTGCACTCCCAACTCTCACTCTCAGAACACATCACCCTCTCTCTTCTCCCAAATCCTTCTCTTCTTCTCTCTCCCTCACCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAACCCACTTTCTCCCTCTCCTCCCGCTTCCTTCCCCGCGTCGCCGTCTCCTCCGACTACGACCAGCAAGAGGACACCTTCACCTCCGCCCAGAGCTTCTCTCCCGACCTTAAGGTCTTTGTCGGCAACCTTCCATTCAGTGTCGACAGTGCGCAGCTCGCAGACCTCTTCGAAAGCGTTGGGATTGTGGAGGTCGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGCTTTGGGTTTGTGACAATGTCTTCGGTAGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCCTTAGAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAGAGTTCATCTCGTGTTAGAAGTTCTAACAGAGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTTTTCAGATAGTAAAAACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTTGACCATGTAGCATTGGAGTCATTGTTTCGGGAACAAGGAAATGTCGTGGAAGCAAGGGTAGTCTATGACAGGGATAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCCGATGAAGTCAGCAGTGCAATTGAGTCCTTGGATGGTGTGGACTTGAATGGCAGACCTATACGAGTCTCATTAGCAGACTCGAAGCCCAGGATGTCTTGA 834 0.5096 MSTSATSLALPTLTLRTHHPLSSPKSFSSSLSLTPNAKPISISTVFLKPTFSLSSRFLPRVAVSSDYDQQEDTFTSAQSFSPDLKVFVGNLPFSVDSAQLADLFESVGIVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYELDGRALRVNAGPPPARNESSSRVRSSNRVGGGGGGGGGGFSDSKNKVHVGNLAWGVDHVALESLFREQGNVVEARVVYDRDSGRSRGFGFVTYSSADEVSSAIESLDGVDLNGRPIRVSLADSKPRMS 277
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium12697g00001 277 MobiDBLite consensus disorder prediction 156 191 - -
Vium12697g00001 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Vium12697g00001 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Vium12697g00001 277 SUPERFAMILY RNA-binding domain, RBD 75 191 IPR035979 GO:0003676
Vium12697g00001 277 SUPERFAMILY RNA-binding domain, RBD 191 275 IPR035979 GO:0003676
Vium12697g00001 277 FunFam 28 kDa ribonucleoprotein, chloroplastic 188 275 - -
Vium12697g00001 277 Gene3D - 62 189 IPR012677 -
Vium12697g00001 277 CDD RRM2_NsCP33_like 195 270 - -
Vium12697g00001 277 SMART rrm1_1 85 158 IPR000504 GO:0003723
Vium12697g00001 277 SMART rrm1_1 195 268 IPR000504 GO:0003723
Vium12697g00001 277 PANTHER OS02G0815200 PROTEIN 18 272 - -
Vium12697g00001 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Vium12697g00001 277 FunFam Ribonucleoprotein A, chloroplastic 63 187 - -
Vium12697g00001 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Vium12697g00001 277 Gene3D - 190 277 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium12697g00001 Vium-Chr12697 9192 11640 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12697g00001 196 274 Eukaryotic Initiation Factors Gene Family AT4G34110 34.177 1.01e-08 53.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12697g00001 - - var:108324910 449.514