Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium12697g00001 | ATGTCTACCTCTGCAACTTCTCTTGCACTCCCAACTCTCACTCTCAGAACACATCACCCTCTCTCTTCTCCCAAATCCTTCTCTTCTTCTCTCTCCCTCACCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAACCCACTTTCTCCCTCTCCTCCCGCTTCCTTCCCCGCGTCGCCGTCTCCTCCGACTACGACCAGCAAGAGGACACCTTCACCTCCGCCCAGAGCTTCTCTCCCGACCTTAAGGTCTTTGTCGGCAACCTTCCATTCAGTGTCGACAGTGCGCAGCTCGCAGACCTCTTCGAAAGCGTTGGGATTGTGGAGGTCGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGCTTTGGGTTTGTGACAATGTCTTCGGTAGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCCTTAGAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAGAGTTCATCTCGTGTTAGAAGTTCTAACAGAGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTTTTCAGATAGTAAAAACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTTGACCATGTAGCATTGGAGTCATTGTTTCGGGAACAAGGAAATGTCGTGGAAGCAAGGGTAGTCTATGACAGGGATAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCCGATGAAGTCAGCAGTGCAATTGAGTCCTTGGATGGTGTGGACTTGAATGGCAGACCTATACGAGTCTCATTAGCAGACTCGAAGCCCAGGATGTCTTGA | 834 | 0.5096 | MSTSATSLALPTLTLRTHHPLSSPKSFSSSLSLTPNAKPISISTVFLKPTFSLSSRFLPRVAVSSDYDQQEDTFTSAQSFSPDLKVFVGNLPFSVDSAQLADLFESVGIVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYELDGRALRVNAGPPPARNESSSRVRSSNRVGGGGGGGGGGFSDSKNKVHVGNLAWGVDHVALESLFREQGNVVEARVVYDRDSGRSRGFGFVTYSSADEVSSAIESLDGVDLNGRPIRVSLADSKPRMS | 277 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium12697g00001 | 277 | MobiDBLite | consensus disorder prediction | 156 | 191 | - | - | |
Vium12697g00001 | 277 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 86 | 156 | IPR000504 | GO:0003723 | |
Vium12697g00001 | 277 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 197 | 266 | IPR000504 | GO:0003723 | |
Vium12697g00001 | 277 | SUPERFAMILY | RNA-binding domain, RBD | 75 | 191 | IPR035979 | GO:0003676 | |
Vium12697g00001 | 277 | SUPERFAMILY | RNA-binding domain, RBD | 191 | 275 | IPR035979 | GO:0003676 | |
Vium12697g00001 | 277 | FunFam | 28 kDa ribonucleoprotein, chloroplastic | 188 | 275 | - | - | |
Vium12697g00001 | 277 | Gene3D | - | 62 | 189 | IPR012677 | - | |
Vium12697g00001 | 277 | CDD | RRM2_NsCP33_like | 195 | 270 | - | - | |
Vium12697g00001 | 277 | SMART | rrm1_1 | 85 | 158 | IPR000504 | GO:0003723 | |
Vium12697g00001 | 277 | SMART | rrm1_1 | 195 | 268 | IPR000504 | GO:0003723 | |
Vium12697g00001 | 277 | PANTHER | OS02G0815200 PROTEIN | 18 | 272 | - | - | |
Vium12697g00001 | 277 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 84 | 162 | IPR000504 | GO:0003723 | |
Vium12697g00001 | 277 | FunFam | Ribonucleoprotein A, chloroplastic | 63 | 187 | - | - | |
Vium12697g00001 | 277 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 194 | 272 | IPR000504 | GO:0003723 | |
Vium12697g00001 | 277 | Gene3D | - | 190 | 277 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium12697g00001 | Vium-Chr12697 | 9192 | 11640 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium12697g00001 | 196 | 274 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 34.177 | 1.01e-08 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium12697g00001 | - | - | var:108324910 | 449.514 |