Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12693g00002 ATGGGGAACAATAGTTTGTTTCGTTATGCAGATGGAGTGGATAGATTGCTGATGTTCTTTGGGACCTTGGGAAGCCTTGGAGATGGACTACAGACCCCTCTAATGATGTACATTCTTAGTGATGTGATCAACGCCTATGGAGACAAAAATAGTCACTTGCAAATGCATGATGTGAACAAGTATGCGTTGAGGCTTTTTTGTGCTGCACTTGGAGTTGGTCTTTCAGCTTTTATTGAAGGAATATGTTGGACAAGAACTGCTGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGACAAGATGTCGGTTTCTTTGACACACAGACTGGTGGCTCTTCAACAACCTACCAAGTTGTTTCACTCATTTCCTCAGATGCCAATACAATCCAAGTTGTCTTGTGTGAGAAGATACCTGATTGCCTGGCTTATATGTCAACATTCCTATTTTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTACATTGGCAGCCATACCACTCTCTATCATGTTCATTGTTCCAGCACTTGTATTTGGGAAGATCATGTTGGACCTCGCAATGAAAATGATTGAGTCTTATGGGGTTGCCGGTGGCATAGCAGAGCAGGCAATATCTTCGATAAGAACTGTTTATTCATATGTTGGGGAGAATCAAACACTAAACAGATTTAGCAGCGCACTTCAGAAAACACTGGAATTTGGAACAAAGCAAGGTTTTGCAAAAGGGTTAATGTTGGGAAGTATGGGGGTCATTTATATAAGTTGGGGCTTTCAAGCTTGGGTTGGAACAATTCTGATCACTAAAATGGGAGAACAAGGTGGCCATGTGTTTGTAGCTGGCTTCAATGTTCTCATGGGAGGCTTGAGCATTTTAAGTGCCCTTCCAAATTTAACTGCCCTCACAGAGGCAACTGCTGCAGTCACACGTCTTTTAGAAATGATTGATCGGGTGCCAACCATAGATTCTGAAGATAAGAAAGGAAAGGCCTTGTCATATGTGAGGGGAGAGATTGAATTTCAAGACATCCACTTTTGTTACCCATCTAGGCCAGACACACCAGTCTTGCAAGGATTCAATCTCACTGTTCCAGCAGGCAAGAAGGTAGGCCTTGTGGGAGGTAGTGGTTCAGGTAAATCCACTATCATAGCCTTGCTTGAAAGGTTTTATGACCCTGTTGAAGGAGTAATACTCTTGGATGGTCACAAGACTAACAGGCTTCAACTGAAGTGGTTGAGATCCCAATTTGGTCTTGTAAATCAAGAACCTGTTCTCTTTGCCACTTCCATAAAAGAGAATATATTGTTTGGCAAGGAAGGAGCTTCAATGGAAAGTGTGATAACTGCGGCTAAAGCAGCTAATGCACATGATTTCATTGTCAAGTTGCCAGATGGATATGAAACTCAAGTTGGGCAGTTTGGGTTTCAGTTGTCTGGTGGGCAGAAGCAACGTGTTGCCATAGCAAGAGCCTTGCTAAGGGATCCAAAGGTTCTCTTGCTTGATGAAGCTACCAGTGCATTGGATGCTCAATCTGAAAGAGTGGTGCAAGCAGCCATTGATCAAGCTTCAAAAGGAAGGACAACAATTATCATCGCTCACCGCTTGTCCACAATTCGATCTGCTCACATGATTGCAGTCCTTCAAGCAGGGAGAGTCATTGAAACAGGTACTCATAATGAGCTCATGGAATTGACTGATGGTGAGTATGCTCACATGGTAGAGTTGCAGCAAGTAACAACCCAAACTGATGAATTCAAACCTTCCAATCTTCAAATAGAAGGAAAGAACTCTCACAGGATGAGCATTCCACAGAGTCCAGCTGTAAGTTTCAGATCAAGCACTGTAGGCAGTCCAATGTTGAATCCCTTCAGTCAGGGGTTTTCCATGGGAACACCATACTCATATTCTATTCAATATGATCCTGATGATGATAGTTATGAGGATAACGTGAAACGAGCTAATCATCCAGCTCCTTCACAGTGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGGAAGAGCAATGCTAGGAATCTTAGGAGCAATAGGGTCAGGAGCAGTACAGCCTGTGAATGCATACTATGTAGGAACACTTATATCAGTTTATTTTGAAACTGATAGCTCTAAGATGAAGTCTAAAGCTAAAGAACTGGCCCTCATTTTCTTAGGAATTGGTGTTTTCAACTTCTTCACTAGTATTCTTCAGCACTATAACTTTGCAGTTATGGGAGAAAGGTTGACTAAAAGAATAAGAGAGAAGATGCTAGAGAAGTTGATGACTTTTGAGATAGGGTGGTTTGATCATGAAGAGAACACAAGTGCGTCCATTTGTGCAAGATTATCCTCTGAAGCCAACTTGGTCCGTTCCCTTGTTGGAGATCGACTGTGTTTGTTGGCTCAAGCAGTTTTTGGGTCTGTCTTCGCCTACACTCTAGGACTTGTGCTCACATGGAGGCTTTCCCTTGTGATGATTGCAGTGCAGCCATTAGTCATTGGAAGCTTTTACTCAAGAAGTGTCTTGATGAAGAGTATGGCCGAGAAAGCTCGTAAGGCACAAAGGGAAGGAAGTCAACTTGCAAGTGAAGCTGTTGTAAACCATAGAACCATAACTGCCTTCAGCTCTCAGAAAAGAATGTTGGCACTTTTCAAATCCACAATGGTAGGGCCTAAAAAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCTCAGTTTTTCAACACTTCATCAACAGCACTGGCTTACTGGTATGGTGGGAGGCTCTTGATAGATCATAAAATAGACTCAAAGGAACTCTTCCAAGCATTTTTAATATTACTCTTCACTGCTTACATAATTGCAGATGCTGGAAGCATGACTTCTGACTTGTCCAAAGGAAGCAGCGCAGTTGGATCAGTTTTTGCAATGCTAGACAGGAAAACTGAGATTGACCCTGAGACTTCATGGGGTGGTGAGAAAAGGAGGAAAATAAGGGGCAGAGTTGACCTAAAAAATATTTTCTTTGCATATCCAACTAGACCTGATCAAATGGTTTTCAAGGGCTTATCTCTTAAAATTGAAGCTGGGAAAACAGTGGCTCTAGTAGGGCACAGTGGTTGTGGTAAATCAACAGTTATTGGTCTTATTGAAAGGTTTTATGATCCTGCAAAGGGAACGGTGTGCATAGATGAGCAAGACATCAAGTCCTATAATTTAAGAATGCTGAGGTCACAAATTGCATTAGTGAGTCAAGAGCCAGCCCTTTTTTCTGGCACCATACGAGAAAACATTGCCTATGGGAAAGAAAACACAACAGAATCTGAGATAAGAAGGGCAGCATCTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAATGATGGGTATGAGACATACTGTGGTGAAAGAGGAGTTCAGCTATCAGGAGGTCAGAAGCAAAGAATAGCATTAGCTAGGGCGATTCTGAAGAATCCTGCAATACTTCTTCTAGATGAGGCTACAAGTGCACTTGATAGTGTGTCAGAGATCTTGGTCCAAGAAGCAATAGAGAAGATAATGGTTGGAAGAACATGCATAGCAGTGGCTCACAGGCTCTCTACAATACAGAAATCCAACTACATTGCTGTGATTAAGAATGGGAAGGTTGTGGAACAAGGTTCACATAACGAATTGATTTCACTCGGACGCGATGGTGCATACAATTCTCTTGTTAAACTGCAAAGTGGTAGCTCTCCTAGATAA 3747 0.4225 MGNNSLFRYADGVDRLLMFFGTLGSLGDGLQTPLMMYILSDVINAYGDKNSHLQMHDVNKYALRLFCAALGVGLSAFIEGICWTRTAERQASRMRMEYLKSVLRQDVGFFDTQTGGSSTTYQVVSLISSDANTIQVVLCEKIPDCLAYMSTFLFCHIFAFVLSWRLTLAAIPLSIMFIVPALVFGKIMLDLAMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALQKTLEFGTKQGFAKGLMLGSMGVIYISWGFQAWVGTILITKMGEQGGHVFVAGFNVLMGGLSILSALPNLTALTEATAAVTRLLEMIDRVPTIDSEDKKGKALSYVRGEIEFQDIHFCYPSRPDTPVLQGFNLTVPAGKKVGLVGGSGSGKSTIIALLERFYDPVEGVILLDGHKTNRLQLKWLRSQFGLVNQEPVLFATSIKENILFGKEGASMESVITAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRVAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRSAHMIAVLQAGRVIETGTHNELMELTDGEYAHMVELQQVTTQTDEFKPSNLQIEGKNSHRMSIPQSPAVSFRSSTVGSPMLNPFSQGFSMGTPYSYSIQYDPDDDSYEDNVKRANHPAPSQWRLLKMNAPEWGRAMLGILGAIGSGAVQPVNAYYVGTLISVYFETDSSKMKSKAKELALIFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKMLEKLMTFEIGWFDHEENTSASICARLSSEANLVRSLVGDRLCLLAQAVFGSVFAYTLGLVLTWRLSLVMIAVQPLVIGSFYSRSVLMKSMAEKARKAQREGSQLASEAVVNHRTITAFSSQKRMLALFKSTMVGPKKESIRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIDHKIDSKELFQAFLILLFTAYIIADAGSMTSDLSKGSSAVGSVFAMLDRKTEIDPETSWGGEKRRKIRGRVDLKNIFFAYPTRPDQMVFKGLSLKIEAGKTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKSYNLRMLRSQIALVSQEPALFSGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNDGYETYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEAIEKIMVGRTCIAVAHRLSTIQKSNYIAVIKNGKVVEQGSHNELISLGRDGAYNSLVKLQSGSSPR 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12693g00002 1248 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524|GO:0016887
Vium12693g00002 1248 PANTHER ABC TRANSPORTER B FAMILY 5 734 IPR039421 -
Vium12693g00002 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium12693g00002 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
Vium12693g00002 1248 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Vium12693g00002 1248 CDD ABC_MTABC3_MDL1_MDL2 343 581 - -
Vium12693g00002 1248 Gene3D - 333 582 IPR027417 -
Vium12693g00002 1248 FunFam ABC transporter B family member 4 993 1246 - -
Vium12693g00002 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1242 IPR027417 -
Vium12693g00002 1248 FunFam ABC transporter B family member 4 333 589 - -
Vium12693g00002 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 985 - -
Vium12693g00002 1248 Gene3D ABC transporter type 1, transmembrane domain 627 990 IPR036640 GO:0005524|GO:0016020
Vium12693g00002 1248 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524|GO:0016887
Vium12693g00002 1248 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium12693g00002 1248 Pfam ABC transporter transmembrane region 681 952 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium12693g00002 1248 SUPERFAMILY ABC transporter transmembrane region 666 986 IPR036640 GO:0005524|GO:0016020
Vium12693g00002 1248 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Vium12693g00002 1248 Gene3D - 993 1246 IPR027417 -
Vium12693g00002 1248 FunFam Putative ABC transporter B family member 8 643 990 - -
Vium12693g00002 1248 FunFam ABC transporter B family member 15-like 6 340 - -
Vium12693g00002 1248 SUPERFAMILY ABC transporter transmembrane region 6 327 IPR036640 GO:0005524|GO:0016020
Vium12693g00002 1248 Gene3D ABC transporter type 1, transmembrane domain 5 595 IPR036640 GO:0005524|GO:0016020
Vium12693g00002 1248 SMART AAA_5 1030 1216 IPR003593 GO:0016887
Vium12693g00002 1248 SMART AAA_5 370 562 IPR003593 GO:0016887
Vium12693g00002 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Vium12693g00002 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Vium12693g00002 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium12693g00002 1248 CDD ABC_MTABC3_MDL1_MDL2 1003 1242 - -
Vium12693g00002 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 582 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12693g00002 Vium-Chr12693 21650 28812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12693g00002 6 1248 Calmodulin-binding Proteins AT2G36910 43.626 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12693g00002 K05658 - gmx:100788127 2277.29