Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12692g00003 ATGCCCGTCCTTGAAACACTTGGCGGTGCTCTTTTTGGTGCTGTTCTTCAGGTGCTATTTGACAAGCTGGATTCTCATCAAGTTCTGGACTTCTTTCGTGGGAGAAATCTCGATGACAAGCTACTGAAAAAGTTGAAGAGGAAGCTGATGGACGTCAATTCTGTGATTGATGATGCAGAACAAAAGCAGTTCAGTAATTCATTGGTCAAAGAATGGGTTGATGAGGTTAGAGACGTCTTGTATGATGCTGAAGATCTGCTGGAGCAAATACACTATGAGTTCTTCAAAAGTGAGTCGGAAGCTGAGTTGCACGCCAGTGCTAGCAAGGTACGCAACTTTGAATCCAAGATGATAGAAGTCCTAGATGATCTAGAATCTCTCTTAAGTCAAAAGGTTGTTCATGATTTTAAAATTTCTACTGGTGTTAGATCTGGGTTTGGTAATAAAGTGTCGGCGAAAAAAGTTGAATCTTCATCCTTGATGGCTAAAGATGCTGTTATTTATGGCAGAGACAAGGACAAAGAAATGATCTTTAGTTGGCTGACATCTGACACTAATGATAATAAGCTGTCAATACTTTCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCTCAACATGTATACAATGATCCAAAGACAGAGGAAGCTAACTTTGATGAAAAAGCTTGGGTTTGCGTTTCTGATGCATTTGATGCTTTGAGAGTATCCAAAGCAATTATTGGAGCTTTCACTAACTCAAGAGATGACAGTGGAGACCTAGAAATGGTTCATGGAAAATTGAAAAAGAAGTTGTCCGAAAGGAAGTTTCTTCTTGTTCTGGATGATGTTTGGAACGAAGACCGAAACCAATGGAAAGCATTACAAACTCCTCTTACGTTTGGAGCTAAAGGAAGTAAAATTCTAGTCACAACACGCAGTCACAAAGTTGCTTCTATCATGCAGTCAACCTACATACACCAACTAAAGCAATTAGATGAAGATCGCAGCTGGCAAATATTTGCTAAACATGCATTCCAAGATGAAAACACTAAGTTGAATTCAGAGTTAAAGGAGATTGGAATAAAGATAGTAGAAAAGTGCCAAGGATTGCCTCTGGCCCTGGAAACAATAGGATGTCTTTTACAGTCAAAGTCATCTGTTTCAGAGTGGGAAGGTGTATTGACAAGCGAGATATGGGACTTACCAATAGAAGATAGTAAAATCGTACCTACTTTGTTGTTGAGCTATTACCATCTTCCTTCACAGCTCAAGAGATGTTTCGCTTATTGTGCATTATTCCCCAAAGACCATAGGTTTGACAAGGAAAGCTAA 1320 0.397 MPVLETLGGALFGAVLQVLFDKLDSHQVLDFFRGRNLDDKLLKKLKRKLMDVNSVIDDAEQKQFSNSLVKEWVDEVRDVLYDAEDLLEQIHYEFFKSESEAELHASASKVRNFESKMIEVLDDLESLLSQKVVHDFKISTGVRSGFGNKVSAKKVESSSLMAKDAVIYGRDKDKEMIFSWLTSDTNDNKLSILSIVGMGGMGKTTLAQHVYNDPKTEEANFDEKAWVCVSDAFDALRVSKAIIGAFTNSRDDSGDLEMVHGKLKKKLSERKFLLVLDDVWNEDRNQWKALQTPLTFGAKGSKILVTTRSHKVASIMQSTYIHQLKQLDEDRSWQIFAKHAFQDENTKLNSELKEIGIKIVEKCQGLPLALETIGCLLQSKSSVSEWEGVLTSEIWDLPIEDSKIVPTLLLSYYHLPSQLKRCFAYCALFPKDHRFDKES 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12692g00003 439 Gene3D - 144 323 IPR027417 -
Vium12692g00003 439 PRINTS Disease resistance protein signature 192 207 - -
Vium12692g00003 439 PRINTS Disease resistance protein signature 363 377 - -
Vium12692g00003 439 PRINTS Disease resistance protein signature 266 280 - -
Vium12692g00003 439 FunFam Probable disease resistance protein At1g61300 149 320 - -
Vium12692g00003 439 Gene3D - 326 415 IPR042197 -
Vium12692g00003 439 Pfam NB-ARC domain 171 390 IPR002182 GO:0043531
Vium12692g00003 439 Gene3D - 16 131 - -
Vium12692g00003 439 PANTHER DISEASE RESISTANCE PROTEIN RP 42 438 IPR044974 GO:0006952
Vium12692g00003 439 Pfam Rx N-terminal domain 13 101 IPR041118 -
Vium12692g00003 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 426 IPR027417 -
Vium12692g00003 439 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12692g00003 Vium-Chr12692 9082 10401 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12692g00003 190 387 WRKY Transcription Factor Family AT5G45050 26.887 2.94e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12692g00003 - - vum:124821571 853.203