Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12692g00001 ATGCCAGTCCTAGAAACACTTGGTGGTGCTCTTTTTGGTGCTGTTCTTCAGGTACTATTTCAAAAGCTGGATTCTCATCAAGTTCTAGACTACTTTCGTGGGAGAAAGCTCGATGAGAAGCTTCTGAAAATTTTGAGGAGGAAGTTGGTGTCCATGAATGCTGTGGTTGATCATGCAGAACTAAAGCAGTTTAGAAATGAATATGTTAAAACGTGGCTTGATGATGTCAGAGACGTGTTGCTTGACACAGAGGATCTGCTGGATGAAATAGAACTTGAATACCAGAGAAGTGCTAGCAAGGTACACACTTTTGAATCCAAGCTGAAAGAAGTCCTTGATGACCTTGAATTTCTTTTGAACCAAAAGGATGATCTAGGTCTAAAAAATGCTGGTGGTATCGGATACGAATTGGGTAATAAGGTGTTAGAGAGAAAAAATGAATCCTCATCATTGGTGGCTGAACATATTATTTGTGGCAGAGACGAGGACAAAGAAATTATCCTTAATTGGCTGACTTCAGGCAATGGCAATCTTAACCAGCTGTCAATACTTGCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCCCAACATGTATACAATGACCCAAAGATGAAGGAAGCTGGATTTGATGAAAAAGCTTGGGTTTGTGTTTCTGATGAATTTGACGTTTTGAAAGTATCAAAAGCCATTATTGGGGCTCTGACTAAATCAAAAGATGATAGTGAAGACATAGAAATGGTTCATGGAAAATTAAAAGAAAAATTGACAGGAAGGAAGTTTCTTCTGGTTCTAGATGATGTTTGGAACGAAGACAGAAACCTATGGAAAACATTGCAAACTCCTCTTCGATATGGAGCTAAAGGAAGTAAAATTATTCTCACAACACGCAGTAACAAAGTGGCTTCTATCATGCAGTCAAGCTACGTACACCAACTAAAGCAATTACAAAAACATTACAGTTGGCAAGTATTTGCTAAAAATGCATTGCAAGATGATAACTCTATGTTGAATTGTGAGTTGGAGGAGATTGGTATGAAGATAGTTGAAAAGTGCAAAGGGTTGCCTCTAGCCCTTGAAACGCTGGGATGTCTTTTACACACAAAGTCATCTGTTTCAGAGTGGGAAGGTGTATTGACAAGCGAGATATGGGACTTATCCATAGAAGATAGTAAAATCATCCCTGCTTTGCTGTTGAGTTATTACCATCTTCCTTCTCATCTCAAGAGATGTTTCGCTTACTGTGCGTTATTTCCCAAAGATCATAAGTTTGACAAGGAGACCTTAATTCTCTTATGGATGGCTGAAAATTTTCTACAATGCTCTCAGCAAAGCAAGTGTCCAGAAGAAGTAGGTGAACTATACTTCAATGATCTGTTATCAAGGTCATTCTTTCAACAATCAATTAAAGACAACGAAACATGTTTTCTCATGCACGACCTTCTCAATGATTTGGCAAAATATGTTTCTGGTGAAATATGCTTCAGGTTGGGAGTTGATAAAGCAGAAAGAGTACCAAAGACAACCCGTCACTTTTCAACAGTAATCAATCCTATTAAATATCGTAAGAGTTTATGTGATGCTAAAGGGCTACGGACATTTATATCCTTTTGGGCGGACTGTGAGATTTCAATACAAGAGTTGATTTCCAACTTTAAGTTCTTACGGGTCTTGTCTTTGCATTGCTTTAAGGTGAAGGAGGTGTCTGACACTATAGCCGATCTTAAGCATCTCCGTTCATTAGACCTTTCAAACACAGGCATAACTAAACTTCCTGACTCAACTTGTTCACTCTGTAACTTGCAAGTATTGAAGCTGAACAAGTGTTTCAATTTACAGGAGCTGCCCTCGAATTTGCATCAACTCACTAGTTTGCGCTGCCTTGAACTTGTGGGAACTACTTTAAGAAAGGCTCCAGTTCATTTAGGAAAATTAAAGAATCTTCGAGTATGGATGGGTAGGTTTGAGGTTGGCAAAAGTAGTCAGTCCAATGTTCAACTTGGAGAATTTGAGCTTCACGGACAATTGTCAATTAGAAGTCTTGAAAATATTGTAAATCCCTATGATGCAATGGCTGCAAATTTGAAAAATAAAAAACATCTTGTGGGGCTAAATCTAGAATGGAGTTTGAATCGTAACAATGACGACTCAATAATAGAAAGAGAAGTACTTGAGAATCTGCAACCTTCCAGACAATTGAAGCATTTGTTAATCGATGGCTATGGTGGCACGCAATTTCCACGTTGGTTATCTGATAATTCTCTATTGAATGTGGAGTCCTTAAGCTTGAATAACTGTAGACATTGCCAATTGTTGCCGTCCCTAGGACTTTTGACATTTCTCAAGCACTTGACAATTCATGGCCTTGATTGCATAGTCAGGATAGATGCTGACTTTTACGGGAATAGCTCTTTCGCATTTGCATCCTTGGAAACGTTGAGCTTTAATGATATGAAGGAATGGGAAGAATGGCAATGCATGACGGGTGCTTTTCCAAGTCTTCATTGTCTTTCTGTGATGAATTGTCCCAAACTGAAAGGGAACTTGCCTGTGCAACTTTCTCGCTTAAAAAAGCTAACTATTGGTCAATGCAAACAACTTGTGGCTTCGATTCCCAAGGCCATAGAAATTGAAGGTGTGAAGATGGAGCCATCTTCATTTGATACTCCTCTTGAATCCTTGAGTATTTATTCATGTCCGGGCATGAATATTCCCACAAACCATTGGTACTCTTTGCATGTAGAGTTGGATATTAGTCAATGTTGTGACTCGCTCACAAACATCCCTCTAGACATATTCCCAAAACTATGCGACCTTTGTTTGGAAGAGTGTCATAACCTAAAGATGATATCACAGGAGCACTGTCATAATGATTTGAAGACTCTGAGCATTGAAAAATGCTCTCAATTTGAATCATTTCCCAATGAAGGATTATTTGCACAGAAGCTGGAGAGATTTCGCATTGAAGGATTGGAGAAATTGAAATCAATGCCTAAAAGCATGTCGGTCCTCCTTCCATCCCTTAATTATTTGTCAATACGCAATTGTCCAGAAGTGGAGTTATCTGAGGGATGTTTGCCCACAAATCTAAAAGAAATGCGTCTGAAGAATTGCTCCAAACTTGTTGCCTCACTAAAGGGGGTTTGGGGAACCAACACTTCTCTAAAATCCTTGTATATTGGCGAAGTGGATGTGGAGTTTTTCCCCTGTGAAGGTTTACTCCCACTCTCTCTTACTAATCTAGCGATATATGATTGTCCAAATCTTAAGAAACTCGACTGCAACGCTCTCTCTCATCTCTCTTCTCTTGAGAAATTGGATCTTTTGAGTTGTCCCAGCCTCCAATGCTTGTCAGAGCAGGCTCTGCCTAAATCCATTTCAGAACTCCGAATTAAAAATTGTCCGTTGCTCAAACAACGGTGCAAGAAACAAGAAGGTGAAGACTGGGAAAAGATTGCTCACATTAAATACATAGACTTTGATTAA 3492 0.3926 MPVLETLGGALFGAVLQVLFQKLDSHQVLDYFRGRKLDEKLLKILRRKLVSMNAVVDHAELKQFRNEYVKTWLDDVRDVLLDTEDLLDEIELEYQRSASKVHTFESKLKEVLDDLEFLLNQKDDLGLKNAGGIGYELGNKVLERKNESSSLVAEHIICGRDEDKEIILNWLTSGNGNLNQLSILAIVGMGGMGKTTLAQHVYNDPKMKEAGFDEKAWVCVSDEFDVLKVSKAIIGALTKSKDDSEDIEMVHGKLKEKLTGRKFLLVLDDVWNEDRNLWKTLQTPLRYGAKGSKIILTTRSNKVASIMQSSYVHQLKQLQKHYSWQVFAKNALQDDNSMLNCELEEIGMKIVEKCKGLPLALETLGCLLHTKSSVSEWEGVLTSEIWDLSIEDSKIIPALLLSYYHLPSHLKRCFAYCALFPKDHKFDKETLILLWMAENFLQCSQQSKCPEEVGELYFNDLLSRSFFQQSIKDNETCFLMHDLLNDLAKYVSGEICFRLGVDKAERVPKTTRHFSTVINPIKYRKSLCDAKGLRTFISFWADCEISIQELISNFKFLRVLSLHCFKVKEVSDTIADLKHLRSLDLSNTGITKLPDSTCSLCNLQVLKLNKCFNLQELPSNLHQLTSLRCLELVGTTLRKAPVHLGKLKNLRVWMGRFEVGKSSQSNVQLGEFELHGQLSIRSLENIVNPYDAMAANLKNKKHLVGLNLEWSLNRNNDDSIIEREVLENLQPSRQLKHLLIDGYGGTQFPRWLSDNSLLNVESLSLNNCRHCQLLPSLGLLTFLKHLTIHGLDCIVRIDADFYGNSSFAFASLETLSFNDMKEWEEWQCMTGAFPSLHCLSVMNCPKLKGNLPVQLSRLKKLTIGQCKQLVASIPKAIEIEGVKMEPSSFDTPLESLSIYSCPGMNIPTNHWYSLHVELDISQCCDSLTNIPLDIFPKLCDLCLEECHNLKMISQEHCHNDLKTLSIEKCSQFESFPNEGLFAQKLERFRIEGLEKLKSMPKSMSVLLPSLNYLSIRNCPEVELSEGCLPTNLKEMRLKNCSKLVASLKGVWGTNTSLKSLYIGEVDVEFFPCEGLLPLSLTNLAIYDCPNLKKLDCNALSHLSSLEKLDLLSCPSLQCLSEQALPKSISELRIKNCPLLKQRCKKQEGEDWEKIAHIKYIDFD 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12692g00001 1163 Coils Coil 73 93 - -
Vium12692g00001 1163 ProSiteProfiles Leucine-rich repeat profile. 579 600 IPR001611 GO:0005515
Vium12692g00001 1163 FunFam Probable disease resistance protein At1g61300 140 311 - -
Vium12692g00001 1163 Coils Coil 101 121 - -
Vium12692g00001 1163 SUPERFAMILY L domain-like 480 866 - -
Vium12692g00001 1163 FunFam Probable disease resistance protein At1g63360 403 490 - -
Vium12692g00001 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 417 IPR027417 -
Vium12692g00001 1163 Gene3D - 402 490 IPR036388 -
Vium12692g00001 1163 Gene3D Ribonuclease Inhibitor 877 1155 IPR032675 -
Vium12692g00001 1163 Gene3D - 138 313 IPR027417 -
Vium12692g00001 1163 Pfam NB-ARC domain 162 381 IPR002182 GO:0043531
Vium12692g00001 1163 Pfam Rx N-terminal domain 13 101 IPR041118 -
Vium12692g00001 1163 Gene3D Ribonuclease Inhibitor 669 876 IPR032675 -
Vium12692g00001 1163 Gene3D Ribonuclease Inhibitor 541 656 IPR032675 -
Vium12692g00001 1163 PRINTS Disease resistance protein signature 354 368 - -
Vium12692g00001 1163 PRINTS Disease resistance protein signature 257 271 - -
Vium12692g00001 1163 PRINTS Disease resistance protein signature 575 591 - -
Vium12692g00001 1163 PRINTS Disease resistance protein signature 183 198 - -
Vium12692g00001 1163 Gene3D - 16 121 - -
Vium12692g00001 1163 SUPERFAMILY L domain-like 893 1155 - -
Vium12692g00001 1163 PANTHER DISEASE RESISTANCE PROTEIN RP 45 937 IPR044974 GO:0006952
Vium12692g00001 1163 Gene3D - 317 401 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12692g00001 Vium-Chr12692 538 4543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12692g00001 184 378 WRKY Transcription Factor Family AT5G45050 26.341 7.56e-09 58.2