Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12691g00001 ATGGCTTCGAGTGGATGGAGAACCATTTTCTTTTTGTTCATAATCAACACTACAAAAGTTCAACCTCACTCTTTCGATTACCCAAACTTCAATTCATCTTATGCAAAGCAACTAAAGTTGGAAGGTAATGCTTCCACCTCAGGTTCTGCTATCCAACTCACAGTAAACGCAACGGATCCAAAGAACAACGGGTCTGGGACAGTAGGAAGAGTGACATATCCAGAGGAGATAAATCTTTGGGACAAGAGTTCAAATGAACTAAAAGACTTCACCACAAACTTTTCCTTTCTTCTTTCCTCCAATCAGAGTATCTATGGAGATGGTTTGGCATTCTTCCTTGCAAGCCCAAATCTTCCATCCACAGACGATGAAAACCTAAGAGGGGGAGGCCTTGGTATAGGGCTTGTTGTTGGCACAGAAAATCTCATTGAGACTGATTATCAATTTGTGGCAGTGGAGTTTGACACCTACTCAGACAACTGGGACCCAGATGGCGCTCATGTAGGTGTAAATATCAATGCTATGAAGTCTGAAATATTCGAGACATGGTGGCTAAATATCACGCAAGGGGAAGTATGTAACTGTAGTATTGTATACAATTCTAGGAAGAATATTTTGAAGGTTTCTTTCACGGGATCCATGTTAGGTGCTGGGAATGAAACTACTCAGCAACTTTCATACCACGTTAATATCAGAGATCAATTACCAAAGTCAGTTATCGTTGGCATATCAGCTGCGACAGGAAGATATGCTGAGGAACATACCTTGCTCTCATGGTCATTCAGCACAAGTACAAGCCCACCACCAAGTGTGGTTAATTCAACGAAGAAATACAAGTTAATCAGTTCAATAATGTTGGAGGGAGTTGTAATTGGTACAGTTTTGTTTTTTATTCTGTTAGGGTTGGTGTATATTTTGTTAAGAAGGATAAACAAAGGAAAAGAAAAGCGCACTTCTCATCTGAAGATGGATGATGACTTCCACAAGAGAACTACAGAGATTAACTATCATGAATTGGCCGCTGCAACCAACAACTTTGAAGACACACATAAACTAGGCCAAGGTGGCTTGGGCTGTGTTTATAAAGGCTATTTTGAATCCTTGAACTCATATGTTGCTATAAAGAAGATATCAACAGGTTCACCACAGGTTTTGAAGGAATATGCAGCAGAAGTGACGATCGTTAGCCAATTGAGGCACAGGAATTTGATGAAACTCACCGGTTGGTGCCACAAGAAGAATGATCTCTTCTTAATATACGAGTACATGCCAAATGGCAGCTTGGATTCTTGTCTTTTTGGTGGAGAGAAGTTCTTGTCATGGAAAATGAGGTACAATGTAGCTTTGGGCTTGGCATCAGCATTGCTTTACCTTCAGGAAGAATGGGAGAAATGTGTGGTTCACAGGGACATCAAATCAAGCAACATACTGCTGGACTCCAACTTCAACCCTAAGCTTGGGGACTTTGGCCAGGCAAGGCTGGTGGATCATGATAAAGGGTCAGAAACGACGGATGTTGCTGGGACCATGGGTTACATAGCTCCTGAATGTATGAACACAGGCCAGGCTCGAAAGGAATCTGATATATTCAGTTTTGGGATTGTTGTGTTGGAGATAGCCACTGGAAGAAAAGCCGTTCACCATGAAGACATGGAGGGTGAAGTATCAGTGGTTGAGTGGGTATGGAGGCTCTATGGATTGAGGAATCTCCTTGCAGCAGTAGATCCAAAGCTGAATGGGGAATTTGATGTGCAGCAAATGGAATGCTTAGTCGTTGTTGGTCTTTGGTGTGCTAGTCCAGATTTTGCATCCAGACCAACCATAAGGCAACTGATAAAGGTGCTTAAGTTTGAAGCTTCTTTGCCAATTCTCTCACAGCAGATCCCATGCAAGCCTCTTTCTGTCCAATAA 1911 0.4212 MASSGWRTIFFLFIINTTKVQPHSFDYPNFNSSYAKQLKLEGNASTSGSAIQLTVNATDPKNNGSGTVGRVTYPEEINLWDKSSNELKDFTTNFSFLLSSNQSIYGDGLAFFLASPNLPSTDDENLRGGGLGIGLVVGTENLIETDYQFVAVEFDTYSDNWDPDGAHVGVNINAMKSEIFETWWLNITQGEVCNCSIVYNSRKNILKVSFTGSMLGAGNETTQQLSYHVNIRDQLPKSVIVGISAATGRYAEEHTLLSWSFSTSTSPPPSVVNSTKKYKLISSIMLEGVVIGTVLFFILLGLVYILLRRINKGKEKRTSHLKMDDDFHKRTTEINYHELAAATNNFEDTHKLGQGGLGCVYKGYFESLNSYVAIKKISTGSPQVLKEYAAEVTIVSQLRHRNLMKLTGWCHKKNDLFLIYEYMPNGSLDSCLFGGEKFLSWKMRYNVALGLASALLYLQEEWEKCVVHRDIKSSNILLDSNFNPKLGDFGQARLVDHDKGSETTDVAGTMGYIAPECMNTGQARKESDIFSFGIVVLEIATGRKAVHHEDMEGEVSVVEWVWRLYGLRNLLAAVDPKLNGEFDVQQMECLVVVGLWCASPDFASRPTIRQLIKVLKFEASLPILSQQIPCKPLSVQ 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12691g00001 636 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Vium12691g00001 636 Pfam Protein kinase domain 346 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12691g00001 636 SUPERFAMILY Protein kinase-like (PK-like) 328 617 IPR011009 -
Vium12691g00001 636 ProSitePatterns Legume lectins beta-chain signature. 150 156 IPR019825 -
Vium12691g00001 636 Gene3D Transferase(Phosphotransferase) domain 1 423 630 - -
Vium12691g00001 636 FunFam Lectin-domain containing receptor kinase A4.3 423 634 - -
Vium12691g00001 636 Pfam Legume lectin domain 24 270 IPR001220 GO:0030246
Vium12691g00001 636 CDD STKc_IRAK 352 616 - -
Vium12691g00001 636 Gene3D - 21 270 - -
Vium12691g00001 636 SMART serkin_6 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12691g00001 636 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12691g00001 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vium12691g00001 636 CDD lectin_legume_LecRK_Arcelin_ConA 24 264 IPR001220 GO:0030246
Vium12691g00001 636 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 269 IPR013320 -
Vium12691g00001 636 PANTHER - 55 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12691g00001 Vium-Chr12691 7237 9147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12691g00001 9 630 Receptor kinase-like Gene Family AT5G10530 42.296 1.96e-158 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium12691g00001 Pkinase 7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12691g00001 - - vum:124829843 795.038