LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1268g00011	ATGGGTTGTTCCTTTTTTTCGTCCGATTCTAATTTTCCCATGTGGGGTTCGGTTCCTCTGTTTTCAGGTGCATCAGCCATTCACGGCAGCAGCGTCGAATTCTCCGAAACCACCACAACCACCGAGATCAGAAAGAGTCAGTTTTCCGTGAGAGAAACCATCTACAGCGATTGCTCTCCTCTTCCTTGTACCGATGGCCAAATTCTGAAATGGCCTGAGTTAAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACTGGAAATTTTAAATCCAACAGATTGGTCGGTGAAGGTGGGTTTGACAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATATTCAACCCGGAAGGTTCTCAAGGATTTGCACAGTGGCAGTCTGAGGTAAATGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTCAGGTTATTGGGATACTGTTGGGACGAGGATCAGTTTCTTCTTGTGTTTGAGTTCATGTCAAAGGGAAGCTTATCGGGGCATCTCTTCATAAGAAATCATGAACCACTTTCGTGGAACACCCGGCTTAAAATAATTATTGGTGCAGCCCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGTCATATTCAGAGATTTCAAGACCTCAAATATACTTCTCGACGGGAATTACAATGCAAAACTAACAGACTTTGGGTTGGCTAAATTGGGACCATCTGAGGGACAATCACATGTAAATACCAGTATCATTGGCACCTATGGTTATGCTGCACCAGAATATATCGCAACAGGGGACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTGACAGGCATGAGGGCACTTGACACAAGAAGGCCAACAGGGCAGCAGAACCTGGTTGAATGGACCAAGTCCTGTCTCTCTTCCAAAAGAAAGTTGAAAACAATTATGGATTCTAAGATAGAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTGCTCTAAAATGCCTAGTGCATGATCCTTATCAACGTCCTTCAATGGAAGAAGTTCTTGAGGGATTGGAAGCTATTGAAGATAACCCAAAACCAGAGGTTCCTGATTGGCGCAAGATGGGTCTCTGTTTCTCCGGTGCTCCATCACTCCATTCCTCTTCACTCAACCGCCCTCACTATAATATCTGTGCCCTTTCTAAACTCATCCCAAAACAGGAAATGGGTTCTTCCTTCTTTTCCTCCGATTTGAATTTTCCCATGACGGGTTCGTTTCCTCTGTTTTCAGGTTCACCAGACATTCACGGCAGCAACGTCGTGGTCCCCGGAACCAACACCACCACCGAGATCGGAAAGAGTCAGTTTTCCATGATAGAAACCATCTACAGCGATTACTCTCCTCTTCCTTTTGCCGATGGCCAAATTCTGAAATGGCCCGAGTTGAAGGTCTTCAGTTTAAGGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCATCCCCGCTAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTATCAAGGGTTTGCACAGTGGCAGTCTGAGGTAAATTTTTTAGGAAGGCTTTCTCACCCCAACGTGATCAGGTTATTGGGGTACTGTTGGGACGAGGATCATTTTCTTCTTGTGTATGAGTTCATGCCAAACGGAAGCCTCGACTGTCATCTCTTCAAAACAAATCATAGCATGGAGCCACTTTCTTGGAACACCCGGCTTAAAATAGCTAAGGGTGCAGCTCGGGGATTAGCTTTCTTGCACGCCACGGAAAATAAAGTCATATTCAGAGATTTCAAGCCCTCAAATATACTTCTCGACGAGAATTACGATGCAAAATTATCAGATTTTGGCCTAGCTAAATTGGGACCATCTGAGGGACAATCACATGTAACTACCAAGGTCTTCGGCACCTATGGTTATGCTGCTCCAGAATATGTTATGAGAGGGCAGTTGTTTGTGAAGAGTGATGTGTATGGATTTGGTGTGGTCCTTCTTGAAATACTTACAGGCATGAGGGCAGTTGACAAAAGAAGGCCAACGAGGCAGCAGAAGCTGGTTGAATGGACAAAACCTTGTCTCTCTTCCGAAAAGAAGTTGAATAGCATAATTGATTGTAGGATAAAGGGTCAAATATCACCCATGGCTGCATTAGAATCAGCACAACTTATTATGAAATGCCTAGAGCATGACCCTGAACAACGTCCTTCAATGAAAGAAGTTTTTGAGGGATTGGAAGCCATTGAAGATAACCATTGA	2394	0.447	MGCSFFSSDSNFPMWGSVPLFSGASAIHGSSVEFSETTTTTEIRKSQFSVRETIYSDCSPLPCTDGQILKWPELKVFSFEELKSATGNFKSNRLVGEGGFDRVYKGWLDENTLTPAKPGSGVEVAIKIFNPEGSQGFAQWQSEVNVLGRLSHPNVVRLLGYCWDEDQFLLVFEFMSKGSLSGHLFIRNHEPLSWNTRLKIIIGAARGLAFLHANENKVIFRDFKTSNILLDGNYNAKLTDFGLAKLGPSEGQSHVNTSIIGTYGYAAPEYIATGDLYVKSDVYGFGVVLLEILTGMRALDTRRPTGQQNLVEWTKSCLSSKRKLKTIMDSKIEGQYSPKAALQAAQLALKCLVHDPYQRPSMEEVLEGLEAIEDNPKPEVPDWRKMGLCFSGAPSLHSSSLNRPHYNICALSKLIPKQEMGSSFFSSDLNFPMTGSFPLFSGSPDIHGSNVVVPGTNTTTEIGKSQFSMIETIYSDYSPLPFADGQILKWPELKVFSLRELKSATGNFKSDRLVGEGGFGRVYKGWLDENTLIPAKPGSGVEVAIKMFNPESYQGFAQWQSEVNFLGRLSHPNVIRLLGYCWDEDHFLLVYEFMPNGSLDCHLFKTNHSMEPLSWNTRLKIAKGAARGLAFLHATENKVIFRDFKPSNILLDENYDAKLSDFGLAKLGPSEGQSHVTTKVFGTYGYAAPEYVMRGQLFVKSDVYGFGVVLLEILTGMRAVDKRRPTRQQKLVEWTKPCLSSEKKLNSIIDCRIKGQISPMAALESAQLIMKCLEHDPEQRPSMKEVFEGLEAIEDNH	797

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1268g00011	797	FunFam	Receptor-like serine/threonine-protein kinase ALE2	594	797	-	-
	Vium1268g00011	797	FunFam	Serine/threonine-protein kinase BIK1	59	174	-	-
	Vium1268g00011	797	Pfam	Protein kinase domain	509	787	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1268g00011	797	Pfam	Protein kinase domain	90	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1268g00011	797	FunFam	Serine/threonine-protein kinase BIK1	480	593	-	-
	Vium1268g00011	797	FunFam	Receptor-like serine/threonine-protein kinase ALE2	175	383	-	-
	Vium1268g00011	797	ProSiteProfiles	Protein kinase domain profile.	89	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1268g00011	797	ProSiteProfiles	Protein kinase domain profile.	508	797	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1268g00011	797	ProSitePatterns	Protein kinases ATP-binding region signature.	514	546	IPR017441	GO:0005524
	Vium1268g00011	797	SUPERFAMILY	Protein kinase-like (PK-like)	490	791	IPR011009	-
	Vium1268g00011	797	Gene3D	Transferase(Phosphotransferase) domain 1	175	383	-	-
	Vium1268g00011	797	Gene3D	Transferase(Phosphotransferase) domain 1	594	797	-	-
	Vium1268g00011	797	Gene3D	Phosphorylase Kinase; domain 1	492	593	-	-
	Vium1268g00011	797	Gene3D	Phosphorylase Kinase; domain 1	73	174	-	-
	Vium1268g00011	797	SUPERFAMILY	Protein kinase-like (PK-like)	70	372	IPR011009	-
	Vium1268g00011	797	PANTHER	OS01G0588500 PROTEIN-RELATED	47	373	-	-
	Vium1268g00011	797	CDD	STKc_IRAK	514	793	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1268g00011	Vium-Chr1268	72482	81277	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1268g00011	484	790	Glycoside Hydrolase	AT3G07070	44.481	8.90e-82	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Vium1268g00011		Pkinase	2.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1268g00011	-		-	vum:124825635	1607.81