Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1268g00007 ATGGAGCGAATATTCAATGCAAAAATAGCAGACTTTGGGTTTGCTAAAGAGCTTCCTGGGGAAGATTCACATGTAATTACCAGGACCATGGGCACCCGTGGTTACATTGCACCAGAATATGCCTTAATGGGGCACTTGTCTGTGAAGTGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGCACTTGACAAAAGAAGGCCAACGGGGCAGCAGAACCTGGTTAAATGGAGCAAGCCCTGTCTCTCTTCCGAAAAAAAGTTGAAAACAATTATCGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTGCGTTACAAGCAGCACAACTTGCTCTAAAATGCCTAGAGGGTGATCCTCATCAACGTCCTTCAATGGAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAGATAACCATTGA 441 0.4422 MERIFNAKIADFGFAKELPGEDSHVITRTMGTRGYIAPEYALMGHLSVKCDVYGFGVVLLEILTGMRALDKRRPTGQQNLVKWSKPCLSSEKKLKTIIDGKIEGQYSPKAALQAAQLALKCLEGDPHQRPSMEEVLEGLEAIEDNH 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1268g00007 146 ProSiteProfiles Protein kinase domain profile. 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1268g00007 146 SUPERFAMILY Protein kinase-like (PK-like) 5 137 IPR011009 -
Vium1268g00007 146 Gene3D Transferase(Phosphotransferase) domain 1 1 146 - -
Vium1268g00007 146 Pfam Protein kinase domain 7 137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1268g00007 146 PANTHER OS01G0588500 PROTEIN-RELATED 5 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1268g00007 Vium-Chr1268 49676 50542 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1268g00007 1 143 Receptor kinase-like Gene Family AT4G02010 46.528 1.42e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1268g00007 Pkinase 9.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1268g00007 - - vum:124825627 293.508