Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1268g00006 ATGGGTCTCTTCTTCTCCTGTGCTCACTCACTTCGTCACTCTTTACTCAACTGCCACCACTTTTCAGGTTCATCAGACATTCACAAGTTCTCCGAAACCACCACAGCCAACACGATCAGAGGGAGTCAGTTTTCCGTGAGAGAAAGCATCGGCAGCAACTGCTCTACTCGTCCTCTTCCTTTTCCCGCTCGCCAAGTTCTGAAATGGCCTGAGTTGAAAGTGTTCAGTTTTAATGAGCTGAAATCTGTCACAAGGAATTTCAGCTCCGACAGATTGGTCGGTGAAGGTGGATTTGGCAGAGTTTACAAGGGATGGTTGGATAAGAACACCCTCACTCCCGCCAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAAAGTTAAACCCGAAGGGTTTTCAAGGGTTTCGACAGTGGCAGTCAGCAGTGAATTTTTTGGGAAGGCTTTCCCACCCCAACCTCGTCAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTCTACGAGTTCATGCCCAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATTGGTGCTGCTCGTGGACTTGCATTCCTGCACATGTCGGAAAAACAAATTATACACAGAGATTTCAAGGCCTCAAATATACTCCTACATGATGTTAGTAACCTTTTTGTTAATTGCTTTTATTACGTTGTTTATTAG 741 0.4521 MGLFFSCAHSLRHSLLNCHHFSGSSDIHKFSETTTANTIRGSQFSVRESIGSNCSTRPLPFPARQVLKWPELKVFSFNELKSVTRNFSSDRLVGEGGFGRVYKGWLDKNTLTPAKPGSGVVVAIKKLNPKGFQGFRQWQSAVNFLGRLSHPNLVKLLGYCWDEDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHMSEKQIIHRDFKASNILLHDVSNLFVNCFYYVVY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1268g00006 246 Gene3D Phosphorylase Kinase; domain 1 71 172 - -
Vium1268g00006 246 Gene3D Transferase(Phosphotransferase) domain 1 173 241 - -
Vium1268g00006 246 SUPERFAMILY Protein kinase-like (PK-like) 68 232 IPR011009 -
Vium1268g00006 246 Pfam Protein tyrosine and serine/threonine kinase 90 232 IPR001245 GO:0004672|GO:0006468
Vium1268g00006 246 FunFam Serine/threonine-protein kinase BIK1 56 172 - -
Vium1268g00006 246 ProSitePatterns Protein kinases ATP-binding region signature. 93 126 IPR017441 GO:0005524
Vium1268g00006 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Vium1268g00006 246 PANTHER OS01G0588500 PROTEIN-RELATED 47 231 - -
Vium1268g00006 246 ProSiteProfiles Protein kinase domain profile. 87 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1268g00006 Vium-Chr1268 47615 49612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1268g00006 73 230 Glycoside Hydrolase AT3G07070 49.057 3.47e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1268g00006 PK_Tyr_Ser-Thr 3.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1268g00006 - - vum:124825631 510.76